{"id":"W4400649010","doi":"10.3390/v16071133","title":"Host–Virus Cophylogenetic Trajectories: Investigating Molecular Relationships between Coronaviruses and Bat Hosts","year":2024,"lang":"en","type":"article","venue":"Viruses","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds de recherche du Québec; Université de Sherbrooke","keywords":"Host (biology); Virology; Biology; Coronavirus disease 2019 (COVID-19); Virus; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); 2019-20 coronavirus outbreak; Coronavirus; Evolutionary biology; Computational biology; Genetics; Medicine; Outbreak; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005722882,0.0002414797,0.0003610174,0.001733452,0.0006555517,0.0006972333,0.0002054051,0.0004140826,0.0009566913],"category_scores_gemma":[0.001570565,0.000169094,0.0004218987,0.001856823,0.0003458635,0.001049168,0.0007643946,0.0005425763,0.0002698792],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002207787,"about_ca_system_score_gemma":0.0002415104,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001663727,"about_ca_topic_score_gemma":0.002229047,"domain_scores_codex":[0.9996698,0.00006510684,0.00001844629,0.0001188351,0.00004440079,0.00008334927],"domain_scores_gemma":[0.9989998,0.0002633786,0.00041229,0.00007271877,0.00009429203,0.0001575197],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004210801,0.00008289866,0.9170781,0.00009215492,0.0002133041,0.0003767345,0.00169337,0.001006525,0.06276939,0.0006458997,0.0002371878,0.01538331],"study_design_scores_gemma":[0.000002720509,0.00009649446,0.9905371,0.00001464175,0.00005234414,0.0004120015,0.0009990825,0.005163578,0.001572877,0.0003759161,0.0007604432,0.00001275871],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998444,0.0003193244,0.0007292323,0.00001909667,0.000001982254,0.000004580043,0.000128125,0.000006741338,0.0003469166],"genre_scores_gemma":[0.9980739,0.0001960789,0.001030068,0.00001388337,0.000005471614,0.000009584821,0.0005174651,0.00000948771,0.0001440124],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001733452,"threshold_uncertainty_score":0.003308117,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1117388005055462,"score_gpt":0.3711814991316196,"score_spread":0.2594426986260734,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}