{"id":"W4400747018","doi":"10.1101/2024.07.12.603319","title":"Complex Reticulation in Backbone Subfamily Relationships in Leguminosae","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant Diversity and Evolution","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Agricultural Research Service; U.S. Department of Agriculture","keywords":"Subfamily; Biology; Evolutionary biology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007471697,0.0002698918,0.0003150276,0.0001307091,0.0001231595,0.000133744,0.0002884957,0.0005303916,0.00007105006],"category_scores_gemma":[0.0001301623,0.0001619833,0.00008932597,0.0008625793,0.00006120322,0.0001287857,0.0003883853,0.0009911987,0.0002365297],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003173301,"about_ca_system_score_gemma":0.0000572669,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007349866,"about_ca_topic_score_gemma":0.000938464,"domain_scores_codex":[0.9980917,0.000219638,0.0003971408,0.0006540938,0.0002619084,0.000375537],"domain_scores_gemma":[0.9993889,0.0001336739,0.0001359624,0.0001481665,0.0000882348,0.0001050932],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004155625,0.0001337481,0.2236098,0.0001361354,0.00001877273,0.0001063086,0.00002305383,0.0002948323,0.7731231,0.00163747,0.0008681662,0.000007073535],"study_design_scores_gemma":[0.0001274476,0.00001864766,0.9940521,0.00035632,0.00001986164,1.342882e-8,0.0000122321,0.001806161,0.001843421,0.0000558881,0.001351565,0.0003563927],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973099,0.0004662035,0.000003674207,0.0008712871,0.0004225315,0.0003786061,0.0003236366,0.000169648,0.00005446262],"genre_scores_gemma":[0.9993386,0.0001110087,0.0002372109,0.00006257709,0.0002062674,0.00002586172,0.000008353782,0.000003436137,0.000006653582],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7712797,"threshold_uncertainty_score":0.6605487,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04508238371921975,"score_gpt":0.2041936113048961,"score_spread":0.1591112275856764,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}