{"id":"W4400877519","doi":"10.3138/jammi-2023-0032","title":"An update on the status of direct testing for <i>Treponema pallidum</i> subspecies <i>pallidum</i> for the laboratory diagnosis of syphilis in Canada","year":2024,"lang":"en","type":"review","venue":"Journal of the Association of Medical Microbiology and Infectious Disease Canada","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control; Public Health Agency of Canada; University of Manitoba; Manitoba Health","funders":"","keywords":"Treponema; Syphilis; Subspecies; Virology; Medicine; Biology; Zoology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00134443,0.0002458355,0.001329469,0.00008588005,0.0001007359,0.000009485461,0.0002772407,0.0001910063,0.00002218688],"category_scores_gemma":[0.008338838,0.0001117421,0.0003791125,0.0003269769,0.0001204012,0.00002340806,0.00004529773,0.0004375997,5.135682e-8],"about_ca_system_candidate":true,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001815507,"about_ca_system_score_gemma":0.01575102,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.4143039,"about_ca_topic_score_gemma":0.9308698,"domain_scores_codex":[0.997501,0.0004336314,0.001151093,0.0001854581,0.0004220087,0.0003067845],"domain_scores_gemma":[0.9883683,0.008703539,0.001913652,0.0002583148,0.0005260361,0.0002301584],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003789105,0.001456135,0.6112061,0.01766203,0.009084336,0.00009998224,0.000171642,0.0000720272,0.00003420393,0.0006416178,0.2548231,0.10437],"study_design_scores_gemma":[0.001830152,0.0006822025,0.02181211,0.01357156,0.007738782,0.00003437888,0.0001397788,0.00001606797,0.0001527924,0.00008303716,0.9537268,0.0002123506],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.04923648,0.9353109,7.8644e-7,0.007130817,0.001098135,0.00129277,0.005905628,0.000003131052,0.00002132936],"genre_scores_gemma":[0.1637558,0.8345042,0.00000493718,0.001281554,0.0002032205,0.0001524458,0.00006188449,0.00002489426,0.00001107407],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.6989037,"threshold_uncertainty_score":0.998297,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01960506184311257,"score_gpt":0.2841992583772353,"score_spread":0.2645941965341227,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}