{"id":"W4400877519","doi":"10.3138/jammi-2023-0032","title":"An update on the status of direct testing for <i>Treponema pallidum</i> subspecies <i>pallidum</i> for the laboratory diagnosis of syphilis in Canada","year":2024,"lang":"en","type":"review","venue":"Journal of the Association of Medical Microbiology and Infectious Disease Canada","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control; Public Health Agency of Canada; University of Manitoba; Manitoba Health","funders":"","keywords":"Treponema; Syphilis; Subspecies; Virology; Medicine; Biology; Zoology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009590086,0.001215313,0.002707443,0.02166047,0.001708956,0.005769678,0.004138287,0.003211025,0.005353646],"category_scores_gemma":[0.03448548,0.0009480462,0.00192441,0.02464824,0.001975394,0.003990805,0.001831593,0.002977342,0.001479014],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.02962714,"about_ca_system_score_gemma":0.1134773,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.6844425,"about_ca_topic_score_gemma":0.8298562,"domain_scores_codex":[0.9914995,0.0008242878,0.002285395,0.0005169602,0.004233111,0.0006407938],"domain_scores_gemma":[0.9224358,0.01542806,0.005982219,0.0009533634,0.05230546,0.00289507],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001756732,0.00005685506,0.002873851,0.06023239,0.0003217123,0.0004339098,0.0007362558,0.0003363261,0.0007348024,0.00170761,0.2730973,0.6592933],"study_design_scores_gemma":[0.00002832723,0.00007415003,0.007440099,0.06327937,0.0008387899,0.0008288059,0.0004240104,0.000123555,0.000200269,0.0003573073,0.9263347,0.00007064124],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0004142784,0.9845299,0.0001627259,0.007210334,0.003134983,0.00004409438,0.001031333,0.00005435668,0.003417998],"genre_scores_gemma":[0.002995692,0.9876097,0.001386995,0.004564067,0.00117847,0.00003804739,0.001245967,0.00002294382,0.0009581615],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.3155575,"threshold_uncertainty_score":0.6348317,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01960506184311257,"score_gpt":0.2841992583772353,"score_spread":0.2645941965341227,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}