{"id":"W4400981921","doi":"10.3390/v16081192","title":"Semi-Covariance Coefficient Analysis of Spike Proteins from SARS-CoV-2 and Its Variants Omicron, BA.5, EG.5, and JN.1 for Viral Infectivity, Virulence and Immune Escape","year":2024,"lang":"en","type":"article","venue":"Viruses","topic":"Fractal and DNA sequence analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa; Carleton University; National Research Council Canada; Western University","funders":"National Research Council Canada; Canadian Institutes of Health Research","keywords":"Infectivity; Virulence; Biology; Immune system; Coronavirus; Virology; Virus; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Genetics; Gene; Medicine; Disease; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001938686,0.0001904686,0.0003502429,0.0001469389,0.00008199313,0.00008784186,0.0000971043,0.0001348243,0.000007405214],"category_scores_gemma":[0.0001065364,0.000167821,0.0001080796,0.0003077602,0.0001396429,0.00003009744,0.0001688682,0.00006919757,0.000001903252],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009151896,"about_ca_system_score_gemma":0.00004457106,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008455944,"about_ca_topic_score_gemma":0.000298726,"domain_scores_codex":[0.9988725,0.00004250145,0.0002552085,0.0005436399,0.0000960767,0.0001900635],"domain_scores_gemma":[0.9995198,0.00005938908,0.00009058625,0.0002234821,0.00006312503,0.00004363073],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008685805,0.00005941504,0.002177108,0.00007795889,0.0007575282,0.000003908325,0.00007416851,0.0000601383,0.9944057,0.0001961512,0.000032051,0.002068965],"study_design_scores_gemma":[0.000287795,0.0002214093,0.009891251,0.00006517407,0.0007727901,0.00000374911,0.00002205482,0.01051595,0.9763079,0.0002632497,0.001425064,0.0002236402],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9772339,0.01510355,0.006753841,0.00007031501,0.00005209391,0.0002442219,0.0004993409,0.00001453033,0.00002813638],"genre_scores_gemma":[0.9976907,0.001505775,0.0004108145,0.0001910708,0.0000529231,0.0000334348,0.0000700943,0.00001611648,0.00002901094],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02045679,"threshold_uncertainty_score":0.6843542,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01860387207278936,"score_gpt":0.286933548304257,"score_spread":0.2683296762314677,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}