{"id":"W4400981921","doi":"10.3390/v16081192","title":"Semi-Covariance Coefficient Analysis of Spike Proteins from SARS-CoV-2 and Its Variants Omicron, BA.5, EG.5, and JN.1 for Viral Infectivity, Virulence and Immune Escape","year":2024,"lang":"en","type":"article","venue":"Viruses","topic":"Fractal and DNA sequence analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa; Carleton University; National Research Council Canada; Western University","funders":"National Research Council Canada; Canadian Institutes of Health Research","keywords":"Infectivity; Virulence; Biology; Immune system; Coronavirus; Virology; Virus; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Genetics; Gene; Medicine; Disease; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003139177,0.0002112332,0.0002213535,0.001071954,0.0001936346,0.0003047095,0.0001862798,0.0001787598,0.0004862213],"category_scores_gemma":[0.00122247,0.00007429725,0.0004421843,0.0005255145,0.000183035,0.0003064408,0.0002164753,0.0003222171,0.000128664],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003195023,"about_ca_system_score_gemma":0.0003069841,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002249702,"about_ca_topic_score_gemma":0.00253867,"domain_scores_codex":[0.9998583,0.00003023697,0.000009827447,0.0000270215,0.00005382021,0.00002080177],"domain_scores_gemma":[0.9993302,0.0002250889,0.0001605018,0.00005127276,0.0001926511,0.00004038451],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.000482138,0.0001454516,0.06383196,0.0002082699,0.0001675486,0.0003646178,0.0003280088,0.04588344,0.8108444,0.007470354,0.001302478,0.06897147],"study_design_scores_gemma":[0.000009845781,0.0001071169,0.08847211,0.00001071468,0.00005799234,0.0003933105,0.0001269768,0.8325277,0.07447455,0.002341214,0.001408592,0.00006987077],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9433697,0.000133263,0.05540327,0.00004757314,0.00001168463,0.00001337536,0.0003115087,0.0001462515,0.0005633507],"genre_scores_gemma":[0.9829881,0.00006611677,0.01602804,0.00001460414,0.000006122559,0.00001223264,0.0005602857,0.00002756241,0.0002970097],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002249702,"threshold_uncertainty_score":0.004473269,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01860387207278936,"score_gpt":0.286933548304257,"score_spread":0.2683296762314677,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}