{"id":"W4401007097","doi":"10.1101/2024.07.24.604657","title":"Refinement of the <i>Brassica napus</i> NLRome using RenSeq","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"","keywords":"Canola; Biology; Brassica; Blackleg; Cultivar; Biotechnology; Gene; Plant disease resistance; Leptosphaeria maculans; Genome; Computational biology; Genetics; Agronomy","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004285914,0.001390643,0.001459124,0.001074369,0.0009015618,0.001528229,0.001297648,0.0005985801,0.003746283],"category_scores_gemma":[0.006527956,0.0007357898,0.001914121,0.0009600039,0.0004680996,0.0008761963,0.001333832,0.002185127,0.00330514],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006746112,"about_ca_system_score_gemma":0.001165338,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00361291,"about_ca_topic_score_gemma":0.009835728,"domain_scores_codex":[0.998382,0.0003811017,0.0001629663,0.0006541749,0.00028917,0.0001305609],"domain_scores_gemma":[0.9976331,0.0009939421,0.0002673802,0.0004765126,0.0004715683,0.0001575589],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003163705,0.0003452915,0.02329404,0.00303613,0.001238564,0.00152834,0.00159462,0.03887656,0.7938608,0.006502695,0.0240225,0.1025367],"study_design_scores_gemma":[0.0008187738,0.00129704,0.06453156,0.0007131444,0.001575177,0.002111303,0.0009758127,0.284193,0.3794889,0.01224754,0.2514761,0.0005716445],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.4418426,0.002105932,0.4136687,0.000675448,0.0006140594,0.0007291017,0.09421888,0.03501841,0.01112692],"genre_scores_gemma":[0.2438378,0.0005150772,0.5444894,0.0007915041,0.00008705263,0.0006914962,0.1941992,0.01125351,0.004134937],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004285914,"threshold_uncertainty_score":0.02266634,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01734187863920968,"score_gpt":0.2030727414167411,"score_spread":0.1857308627775314,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}