{"id":"W4401036098","doi":"10.1111/1462-2920.16681","title":"Assembly and comparative analyses of the <i>Geosiphon pyriformis</i> metagenome","year":2024,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"Biology; Metagenomics; Computational biology; Evolutionary biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001503617,0.0001581573,0.0002501857,0.00002698831,0.0001616798,0.000007379531,0.0002988001,0.0001210175,0.003870292],"category_scores_gemma":[0.000003831158,0.000106913,0.00009681821,0.0001121475,0.001257806,0.00007878361,0.000630799,0.0002576976,0.0003844251],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006835575,"about_ca_system_score_gemma":0.000006134434,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001283195,"about_ca_topic_score_gemma":0.0001663238,"domain_scores_codex":[0.9989908,0.0002845626,0.0002132509,0.0002678435,0.00003067137,0.000212883],"domain_scores_gemma":[0.9994875,0.0001505842,0.00006502661,0.0002619314,6.86236e-7,0.00003427415],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001394639,0.00005155289,0.002905112,0.000006047005,0.00006604719,0.000001505001,0.0004268083,0.00008568684,0.9935791,0.00009144928,0.002504299,0.0002684525],"study_design_scores_gemma":[0.0003410727,0.0002969742,0.1051125,0.00001918213,0.0001560545,0.0002108174,0.0003420736,0.0001254139,0.6961862,0.0006900376,0.1961662,0.000353457],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952583,0.001132348,0.00001787292,0.0001637019,0.0002002464,0.0001683137,0.0001033675,0.00001586992,0.002940007],"genre_scores_gemma":[0.9986638,0.0001098397,0.000116047,0.0003601576,0.00001373535,0.000006618858,0.00005429128,0.000007137746,0.0006683952],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2973929,"threshold_uncertainty_score":0.9970403,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03365370223614115,"score_gpt":0.271169635539955,"score_spread":0.2375159333038138,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}