{"id":"W4401040222","doi":"10.1101/2024.07.25.604189","title":"<i>Mycobacterium avium</i> subspecies <i>paratuberculosis</i> targets M cells in enteroid-derived monolayers through interactions with β1 integrins","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"","keywords":"Mycobacterium avium subspecies paratuberculosis; Biology; Paratuberculosis; Immune system; Tropism; Intestinal epithelium; Epithelium; Cell biology; Microbiology; Mycobacterium; Immunology; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001302976,0.000219976,0.0001539012,0.00009158757,0.0001233352,0.000336759,0.0001562697,0.0003343261,0.001335874],"category_scores_gemma":[0.00008668205,0.0001151521,0.0002682421,0.0001005256,0.00009416376,0.000178504,0.0001873501,0.0004963278,0.0008204514],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001592749,"about_ca_system_score_gemma":0.000102015,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006563694,"about_ca_topic_score_gemma":0.0007765375,"domain_scores_codex":[0.9998376,0.00003139618,0.00001532213,0.00003004617,0.000035278,0.00005024085],"domain_scores_gemma":[0.9999448,0.00001373698,0.00001068177,0.000009236318,0.00001258004,0.000008898709],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003732574,0.00001601696,0.0002501969,0.00002734841,0.000001992901,0.0000457001,0.00001990421,0.00002669464,0.9991156,0.00005413149,0.00004500206,0.0003599588],"study_design_scores_gemma":[0.00001473949,0.0005144957,0.009053942,0.0000215603,0.00001686663,0.0004746716,0.0002036638,0.001452431,0.9829888,0.00003720309,0.005216495,0.000005108554],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9916195,0.001253766,0.003307745,0.0001554464,0.00002900004,0.00003144045,0.0003046702,0.00003967372,0.003258859],"genre_scores_gemma":[0.991416,0.0009259811,0.003944254,0.0001032404,0.00000713722,0.00003983336,0.000684147,0.000007213009,0.002872118],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001335874,"threshold_uncertainty_score":0.004468918,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01606821364399913,"score_gpt":0.2501824612517065,"score_spread":0.2341142476077073,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}