{"id":"W4401190340","doi":"10.1098/rspb.2024.1157","title":"Archival mitogenomes identify invasion by the <i>Batrachochytrium dendrobatidis</i> CAPE lineage caused an African amphibian extinction in the wild","year":2024,"lang":"en","type":"article","venue":"Proceedings of the Royal Society B Biological Sciences","topic":"Amphibian and Reptile Biology","field":"Environmental Science","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Natural Environment Research Council; Canadian Institute for Advanced Research; Medical Research Council; National Research Foundation; Sight Research UK; Leverhulme Trust","keywords":"Amphibian; Chytridiomycosis; Extinction (optical mineralogy); Cape; Biology; Ecology; Lineage (genetic); Salamander; Geography; Zoology; Archaeology; Paleontology; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002038261,0.0001538893,0.0000885152,0.001105253,0.0004273509,0.0003326598,0.0001532736,0.0002281042,0.001926561],"category_scores_gemma":[0.0005340663,0.00009380071,0.0001055398,0.0006542996,0.0001828644,0.0001484014,0.0002404761,0.0002951436,0.0004365695],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002904182,"about_ca_system_score_gemma":0.000158861,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006826977,"about_ca_topic_score_gemma":0.02260134,"domain_scores_codex":[0.9998733,0.00001078547,0.000009953914,0.00004827707,0.00002903393,0.00002858574],"domain_scores_gemma":[0.9995957,0.00004245668,0.0001799538,0.00003878724,0.0000784572,0.00006471316],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003134231,0.00007254338,0.503861,0.0001462517,0.00006520873,0.0003430668,0.001475338,0.0002363173,0.4675932,0.0003456664,0.001866176,0.02368191],"study_design_scores_gemma":[0.00000354975,0.00004567179,0.9876602,0.00001313853,0.00002153912,0.0002514779,0.0004699412,0.0002737633,0.005857806,0.00003638527,0.005362082,0.000004464775],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9931617,0.0001189052,0.0005014604,0.00004158735,0.00001008616,0.00002759172,0.004691891,0.00001952967,0.001427286],"genre_scores_gemma":[0.9830052,0.0001713257,0.00218653,0.00006936332,0.00001371583,0.00006805714,0.01195177,0.00001200648,0.002522056],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006826977,"threshold_uncertainty_score":0.01357448,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0236781029826677,"score_gpt":0.2509366949775677,"score_spread":0.2272585919949,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}