{"id":"W4401252103","doi":"10.1038/s44298-024-00047-z","title":"Inferring enterovirus D68 transmission dynamics from the genomic data of two 2022 North American outbreaks","year":2024,"lang":"en","type":"article","venue":"npj Viruses","topic":"Viral Infections and Immunology Research","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Sunnybrook Hospital; Simon Fraser University; Public Health Agency of Canada; Université Laval; University of Toronto; Ontario College of Art and Design; University of British Columbia; Public Health Ontario; York University","funders":"Natural Sciences and Engineering Research Council of Canada; Public Health Agency of Canada","keywords":"Outbreak; Demography; Most recent common ancestor; Phylogenetic tree; Coronavirus disease 2019 (COVID-19); Transmission (telecommunications); Geography; Virology; Biology; Medicine; Genetics; Disease; Internal medicine; Infectious disease (medical specialty); Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005026305,0.0002577397,0.0002390403,0.0009490182,0.0005743054,0.0005508591,0.0002780079,0.0003875273,0.0005664053],"category_scores_gemma":[0.001611719,0.0002138924,0.0003770409,0.001055949,0.0002348101,0.0002611923,0.0004534098,0.0003378317,0.0001317897],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001304851,"about_ca_system_score_gemma":0.0009384419,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.2335484,"about_ca_topic_score_gemma":0.2836607,"domain_scores_codex":[0.9998021,0.00004260759,0.0000094037,0.000062071,0.00002909956,0.00005477725],"domain_scores_gemma":[0.9993312,0.0002106518,0.0001427401,0.00005193894,0.0001770579,0.00008645175],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000219241,0.00004451464,0.9772664,0.00005099396,0.0001256831,0.0003929019,0.000459516,0.008269547,0.003705245,0.0001750392,0.001609393,0.007681394],"study_design_scores_gemma":[0.00001485125,0.00002316554,0.9622461,0.00002782682,0.00006422887,0.0001289249,0.001329494,0.03272964,0.0004447526,0.0002199741,0.002757446,0.00001357072],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974588,0.00009952408,0.0005003419,0.00006431251,0.000002942615,0.000005892309,0.001493194,0.00001340135,0.0003616278],"genre_scores_gemma":[0.9934744,0.0001145624,0.0009326906,0.00004124968,0.00000617418,0.000009570065,0.005271378,0.000004955754,0.0001450963],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2335484,"threshold_uncertainty_score":0.4643781,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07411262941184178,"score_gpt":0.3789612208185391,"score_spread":0.3048485914066973,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}