{"id":"W4401329993","doi":"10.7554/elife.95411.1","title":"3D genomic features across &gt;50 diverse cell types reveal insights into the genomic architecture of childhood obesity","year":2024,"lang":"en","type":"preprint","venue":"eLife","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Genome-wide association study; Expression quantitative trait loci; Biology; Quantitative trait locus; Genetics; Genetic architecture; Locus (genetics); Epigenomics; Linkage disequilibrium; Genomics; Gene; Haplotype; Genome; Genotype; Gene expression; Single-nucleotide polymorphism; DNA methylation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003251601,0.0002926937,0.0005164391,0.001178206,0.000392757,0.0008429953,0.0002823515,0.0003122861,0.003506555],"category_scores_gemma":[0.0006663498,0.0003138857,0.000919693,0.001381442,0.0002881061,0.0002313566,0.0008600123,0.000433273,0.0009725439],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002133771,"about_ca_system_score_gemma":0.0002381406,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004180131,"about_ca_topic_score_gemma":0.006900932,"domain_scores_codex":[0.9997656,0.00002524521,0.00001195164,0.0000985667,0.00005851233,0.00004013938],"domain_scores_gemma":[0.9996663,0.0001098767,0.00005624178,0.00008501534,0.00005147764,0.00003104646],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005203479,0.00005293434,0.2956775,0.0005393745,0.0008224972,0.0007806848,0.0006659795,0.01667931,0.6087903,0.003635267,0.00506485,0.06677093],"study_design_scores_gemma":[0.00003408697,0.0001068346,0.8753513,0.00006238729,0.0003864533,0.0008572296,0.0004933705,0.04714945,0.04960354,0.004637187,0.02125354,0.00006461467],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8957992,0.001793978,0.06372846,0.0001901905,0.00004373118,0.00003894784,0.03320935,0.001446415,0.003749602],"genre_scores_gemma":[0.9498308,0.0006553956,0.02321061,0.0001549182,0.00002053949,0.00008738782,0.02435665,0.0003101546,0.001373661],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004180131,"threshold_uncertainty_score":0.01173055,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006403570144718602,"score_gpt":0.2448943956287949,"score_spread":0.2384908254840763,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}