{"id":"W4401333613","doi":"10.1093/gbe/evae169","title":"Chromosome-Scale Assembly and Annotation of Eight <i>Arabidopsis thaliana</i> Ecotypes","year":2024,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Genetic Mapping and Diversity in Plants and Animals","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Alliance de recherche numérique du Canada; University of Toronto; Innovation, Science and Economic Development Canada","keywords":"Biology; Arabidopsis thaliana; Ecotype; Annotation; Scale (ratio); Evolutionary biology; Chromosome; Arabidopsis; Computational biology; Genetics; Gene; Mutant","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002433317,0.0003677652,0.0003078933,0.0005770579,0.0005051606,0.0004706869,0.0004379181,0.0003606019,0.0009454506],"category_scores_gemma":[0.0004371196,0.0002117725,0.0005227918,0.0006237425,0.0001466238,0.0001960076,0.0002941548,0.0005582878,0.0006981106],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005578059,"about_ca_system_score_gemma":0.0006389249,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005834056,"about_ca_topic_score_gemma":0.0153658,"domain_scores_codex":[0.9998486,0.00001388905,0.00001905147,0.00006468892,0.00003358479,0.00002012738],"domain_scores_gemma":[0.9996711,0.00005516707,0.00006829846,0.00005580012,0.000088206,0.00006150999],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002439819,0.00002517218,0.004920434,0.0001352358,0.00003743308,0.0002174835,0.0002343326,0.0004687333,0.9829262,0.0001617785,0.0004952375,0.01013407],"study_design_scores_gemma":[0.0001455796,0.0005019093,0.3519892,0.0001345669,0.0004492695,0.001966762,0.0009631126,0.01091932,0.5585566,0.0007141128,0.07352934,0.0001301106],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.93954,0.0007676412,0.02805625,0.0001730661,0.00008450179,0.0002211062,0.02794969,0.0008360143,0.002371867],"genre_scores_gemma":[0.7454544,0.0008694704,0.1398841,0.0002330352,0.00002815871,0.0002369921,0.1088746,0.000820741,0.003598509],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005834056,"threshold_uncertainty_score":0.0116002,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006478226554317189,"score_gpt":0.2226721006603322,"score_spread":0.216193874106015,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}