{"id":"W4401493765","doi":"10.1007/s00122-024-04708-8","title":"Genetic diversity and genome-wide association study of partial resistance to Sclerotinia stem rot in a Canadian soybean germplasm panel","year":2024,"lang":"en","type":"article","venue":"Theoretical and Applied Genetics","topic":"Plant pathogens and resistance mechanisms","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Guelph","funders":"Agriculture and Agri-Food Canada; Grain Farmers of Ontario","keywords":"Biology; Sclerotinia; Sclerotinia sclerotiorum; Germplasm; Genetic diversity; Plant disease resistance; Association mapping; Genome-wide association study; Stem rot; Genetics; Cultivar; Biotechnology; Genotype; Single-nucleotide polymorphism; Agronomy; Horticulture; Gene; Population","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003086701,0.0001200178,0.000189053,0.00002764208,0.0002266125,0.00004464708,0.0001128558,0.00008833427,0.00002946601],"category_scores_gemma":[0.00001256819,0.00005903112,0.00001917053,0.0002112157,0.00006317021,0.00001006052,0.0001756532,0.00009296196,0.000004279149],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004355547,"about_ca_system_score_gemma":0.00001138105,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007478421,"about_ca_topic_score_gemma":0.06800737,"domain_scores_codex":[0.9989341,0.00005455561,0.000192692,0.0003103315,0.0001858611,0.0003223867],"domain_scores_gemma":[0.9994794,0.000189173,0.00002959417,0.00004484761,0.00001882745,0.0002382224],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004641256,0.0004559067,0.5444688,0.000178792,0.0001234693,0.0001548068,0.00806345,0.0001292317,0.3005911,0.1242432,0.00009212088,0.021035],"study_design_scores_gemma":[0.0001985332,0.000254552,0.9895987,0.00002948809,0.00003877673,0.000001044199,0.0008617949,0.0001225569,0.001008195,0.006992076,0.0006789159,0.0002153786],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985319,0.0002053064,0.00001259462,0.0003316535,0.00003842342,0.0004105292,0.0000994904,0.00001588911,0.0003542492],"genre_scores_gemma":[0.9996277,0.00007092378,0.00006903581,0.0001013103,0.000049452,0.00001325556,0.000003204103,0.00000157279,0.00006353002],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4451299,"threshold_uncertainty_score":0.948999,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01530308510895746,"score_gpt":0.1877825039869274,"score_spread":0.17247941887797,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}