{"id":"W4401503237","doi":"10.1016/j.ijantimicag.2024.107299","title":"Neisseria gonorrhoeae ST-1901 in Rio de Janeiro from 2006 to 2022: Phylogeny and antimicrobial resistance evolution of a well-succeeded pathogen","year":2024,"lang":"en","type":"article","venue":"International Journal of Antimicrobial Agents","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":false,"ca_institutions":"Discovery Air (Canada)","funders":"Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro; Centers for Disease Control and Prevention; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"Neisseria gonorrhoeae; Pathogen; Microbiology; Antimicrobial; Antibiotic resistance; Neisseriaceae; Biology; Opportunistic pathogen; Phylogenetics; Bacteria; Antibiotics; Genetics; Pseudomonas aeruginosa; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003567713,0.000382465,0.0004122566,0.00126966,0.0006800435,0.0009374803,0.0005187864,0.0006080864,0.0006126708],"category_scores_gemma":[0.001218193,0.0002556167,0.0003411111,0.001849823,0.0004839985,0.0003476639,0.0006106575,0.000586663,0.0001584164],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001126893,"about_ca_system_score_gemma":0.001209045,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.05702678,"about_ca_topic_score_gemma":0.09105291,"domain_scores_codex":[0.9996125,0.0000515172,0.00002850085,0.0001012751,0.00008615562,0.0001200448],"domain_scores_gemma":[0.9993678,0.00007716706,0.000232359,0.00005367764,0.0001833757,0.00008577458],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008447529,0.0001507842,0.8565026,0.0004596853,0.000385042,0.002290733,0.009959214,0.0009719491,0.0776467,0.001407587,0.0009160035,0.048465],"study_design_scores_gemma":[0.000007931944,0.00009472608,0.9874598,0.00006862907,0.00006429837,0.0009843648,0.002488908,0.0002588587,0.0007516568,0.00005121642,0.007755058,0.00001459598],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956493,0.001439994,0.0001806903,0.000166112,0.00001629353,0.0000183931,0.0005603612,0.000005989804,0.001962923],"genre_scores_gemma":[0.9972414,0.0009490181,0.0003932258,0.00009291499,0.00001002684,0.00000998893,0.000812713,0.000008606309,0.0004821483],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05702678,"threshold_uncertainty_score":0.1133897,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0104359203853085,"score_gpt":0.2862621204705063,"score_spread":0.2758262000851978,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}