{"id":"W4401537043","doi":"10.3390/v16081293","title":"A Standardized Pipeline for Assembly and Annotation of African Swine Fever Virus Genome","year":2024,"lang":"en","type":"article","venue":"Viruses","topic":"Animal Disease Management and Epidemiology","field":"Agricultural and Biological Sciences","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"Oak Ridge Institute for Science and Education; Oak Ridge Associated Universities; U.S. Department of Agriculture; U.S. Department of Energy","keywords":"Annotation; Genome; Pipeline (software); African swine fever virus; Sequence assembly; Reference genome; Outbreak; Computational biology; DNA sequencing; Whole genome sequencing; Computer science; Biology; Genetics; Virus; Virology; DNA; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006435303,0.002350565,0.001580026,0.003551176,0.00280757,0.002705164,0.002629997,0.001543235,0.01610478],"category_scores_gemma":[0.01056686,0.002125163,0.002562605,0.002726116,0.0008044051,0.002122454,0.00306196,0.003912892,0.01463547],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001512574,"about_ca_system_score_gemma":0.005455742,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006551202,"about_ca_topic_score_gemma":0.01091182,"domain_scores_codex":[0.9964026,0.0005392509,0.0005242054,0.001244439,0.0008813202,0.0004082179],"domain_scores_gemma":[0.9962559,0.00092295,0.0004606363,0.000792663,0.001297981,0.0002698907],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001620402,0.0004178904,0.009385876,0.004372827,0.0004694881,0.001332761,0.003157953,0.009965193,0.4570152,0.009548486,0.196328,0.3063859],"study_design_scores_gemma":[0.0003825128,0.0007748947,0.02403503,0.0006698153,0.0003595772,0.00164586,0.0006876313,0.07262578,0.2727138,0.01348445,0.6119581,0.0006624812],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.02146309,0.0008875453,0.8189949,0.0006291028,0.0007383188,0.003471816,0.05919323,0.08558528,0.009036763],"genre_scores_gemma":[0.02235914,0.0004267719,0.8630618,0.0003807516,0.00009344122,0.003221102,0.09707861,0.007941266,0.005437205],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01610478,"threshold_uncertainty_score":0.05387586,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05077980021641147,"score_gpt":0.2934292686659484,"score_spread":0.2426494684495369,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}