{"id":"W4401618221","doi":"10.1080/22221751.2024.2392667","title":"Descriptive epidemiology and phylogenetic analysis of highly pathogenic avian influenza H5N1 clade 2.3.4.4b in British Columbia (B.C.) and the Yukon, Canada, September 2022 to June 2023","year":2024,"lang":"en","type":"article","venue":"Emerging Microbes & Infections","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Yukon Department of Environment; Ministry of Agriculture; Public Health Agency of Canada; Canadian Wildlife Federation; Canadian Food Inspection Agency; Environment and Climate Change Canada; Government of British Columbia; BC Centre for Disease Control; University of British Columbia","funders":"British Columbia Centre for Disease Control","keywords":"Clade; Influenza A virus subtype H5N1; Highly pathogenic; Phylogenetic tree; Epidemiology; Avian influenza virus; Virology; Phylogenetics; Biology; Geography; Medicine; Virus; Genetics; Gene; Internal medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009034227,0.0001764597,0.0008062896,0.0005199506,0.0003211776,0.00006741722,0.00008822091,0.00009807106,0.000227059],"category_scores_gemma":[0.001001759,0.0001944975,0.0001695141,0.002358556,0.0004870315,0.00006087883,0.000229246,0.0004715511,0.00000756536],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002973148,"about_ca_system_score_gemma":0.0003260221,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8579504,"about_ca_topic_score_gemma":0.991235,"domain_scores_codex":[0.9977542,0.0004197367,0.0006665349,0.0004553748,0.0001777031,0.0005264682],"domain_scores_gemma":[0.9984521,0.0008236709,0.00008094824,0.0002879756,0.0001880705,0.000167269],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00006932719,0.00009829955,0.9136879,0.0002794096,0.004135038,0.00009397603,0.002682183,0.0013361,0.0255403,0.00008783555,0.047203,0.004786644],"study_design_scores_gemma":[0.0009830549,0.0001071591,0.9357943,0.0002661411,0.001384724,0.00008849183,0.0007952912,0.0007959011,0.0001007023,0.0001299361,0.05933841,0.0002158837],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9727826,0.02436338,0.00006456672,0.001340855,0.0002417515,0.0006372377,0.0002611303,0.00003374243,0.0002747131],"genre_scores_gemma":[0.9941256,0.001848054,0.0001581574,0.001388606,0.00007395779,0.0002012439,0.00002245435,0.00003101579,0.00215091],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1332845,"threshold_uncertainty_score":0.7931376,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02664464466816478,"score_gpt":0.3203686725225761,"score_spread":0.2937240278544113,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}