{"id":"W4401669293","doi":"10.1101/2024.08.15.608135","title":"Impact of a defined bacterial community including and excluding <i>Megamonas hypermegale</i> on broiler cecal microbiota and resistance to <i>Salmonella</i> infection","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Animal Nutrition and Physiology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Broiler; Salmonella; Microbiology; Biology; Resistance (ecology); Salmonella infection; Veterinary medicine; Bacteria; Medicine; Food science; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001952969,0.0004793774,0.0003374442,0.0002170513,0.0001724628,0.0004696019,0.0001757158,0.0002912387,0.0007053659],"category_scores_gemma":[0.0001692135,0.0001760431,0.0002368973,0.00009407805,0.0002863985,0.0001902037,0.0003780411,0.0004672002,0.0001206699],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002520822,"about_ca_system_score_gemma":0.000230165,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001717829,"about_ca_topic_score_gemma":0.002599977,"domain_scores_codex":[0.9997459,0.0000452721,0.00002408514,0.00006760631,0.00004957234,0.00006760194],"domain_scores_gemma":[0.9996845,0.000035168,0.0001014349,0.00001800923,0.00003705218,0.0001238851],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003603101,0.00006711572,0.001790395,0.00003119496,0.000009207785,0.00001771233,0.00001275947,0.00003492014,0.9971437,0.000005735287,0.000009420262,0.0005175679],"study_design_scores_gemma":[0.00004579979,0.008476417,0.1645049,0.00003468659,0.00009091019,0.000303046,0.0002975748,0.000855547,0.8243382,0.00002469114,0.00100574,0.00002254999],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994364,0.000100246,0.0001443471,0.0000162496,0.000004849863,0.00001709332,0.00008665549,0.000008302809,0.0001857527],"genre_scores_gemma":[0.9985361,0.0001007381,0.0007040317,0.00006488773,0.00000499741,0.00001975082,0.0002223438,0.000006234401,0.0003408927],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001717829,"threshold_uncertainty_score":0.003415585,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03075567893938511,"score_gpt":0.2452662680812259,"score_spread":0.2145105891418408,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}