{"id":"W4401700859","doi":"10.7554/elife.99352.1","title":"Systems genomics of salinity stress response in rice","year":2024,"lang":"en","type":"preprint","venue":"eLife","topic":"Genetic Mapping and Diversity in Plants and Animals","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université du Québec à Montréal","funders":"","keywords":"Biology; Domestication; Local adaptation; Gene; Genetics; Adaptation (eye); Genomics; Evolutionary biology; Gene expression; Genetic variation; Transcriptome; Gene regulatory network; Population; Genome; Neuroscience","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004359426,0.0002559198,0.0004492889,0.000697668,0.000268822,0.0005459199,0.0002169597,0.0002029988,0.001379866],"category_scores_gemma":[0.0004455597,0.0001630475,0.0004936866,0.001175688,0.0002920191,0.0002838116,0.0005167151,0.0003712529,0.000263098],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006252883,"about_ca_system_score_gemma":0.0005029354,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003392678,"about_ca_topic_score_gemma":0.004522876,"domain_scores_codex":[0.9997742,0.00003444418,0.000009429499,0.0001278904,0.00002673492,0.00002744474],"domain_scores_gemma":[0.9997941,0.000082823,0.00004895177,0.00002757392,0.00002400764,0.00002257474],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005419602,0.0001026254,0.1389732,0.0009325218,0.0006171062,0.0003544316,0.001183811,0.01751979,0.7699805,0.008479532,0.002055915,0.0592586],"study_design_scores_gemma":[0.00005279691,0.0001822471,0.9237016,0.00006260301,0.0002292235,0.0003024405,0.0005019114,0.01916774,0.02403306,0.01631323,0.01540526,0.00004783141],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.951698,0.0009072347,0.02349497,0.0002996211,0.0000105779,0.00002916215,0.01993909,0.0004177075,0.003203595],"genre_scores_gemma":[0.9567455,0.0006084422,0.01876559,0.0001606782,0.00001550225,0.00005914992,0.02237428,0.0001328097,0.001137893],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003392678,"threshold_uncertainty_score":0.006745815,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02023539843102789,"score_gpt":0.2587100074461627,"score_spread":0.2384746090151348,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}