{"id":"W4401715634","doi":"10.1128/spectrum.00031-24","title":"The core microbiome of cultured Pacific oyster spat is affected by age but not mortality","year":2024,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fisheries and Oceans Canada; Tula Foundation; University of British Columbia","funders":"Fisheries and Oceans Canada; Ministry of Technology, Innovation and Citizens' Services; British Columbia Knowledge Development Fund; Natural Sciences and Engineering Research Council of Canada; University of British Columbia; North Pacific Research Board; Gordon and Betty Moore Foundation","keywords":"Microbiome; Biology; Oyster; Metagenomics; Shellfish; Ecology; Zoology; Fishery; Fish <Actinopterygii>; Aquatic animal; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0003959434,0.0002891788,0.0003785401,0.00003973337,0.0003804816,0.00003338675,0.0007183554,0.000385357,0.004767978],"category_scores_gemma":[0.00001606682,0.0001995884,0.0001874676,0.0002901697,0.001779136,0.00006689975,0.0004534324,0.0005540383,0.001202004],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001206925,"about_ca_system_score_gemma":0.00001939277,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004291684,"about_ca_topic_score_gemma":0.001969063,"domain_scores_codex":[0.998133,0.0003620389,0.0003859599,0.0004955287,0.00004277891,0.0005806892],"domain_scores_gemma":[0.9989462,0.000208171,0.0001163496,0.0006634384,0.000007128051,0.00005874557],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003976993,0.00006618775,0.0007896108,0.00001841971,0.0001017071,0.00001419727,0.0005652971,0.000001302198,0.802805,0.0001080708,0.1954205,0.00006990536],"study_design_scores_gemma":[0.000387911,0.0003135355,0.009308876,0.0000282728,0.00008095243,0.0001630017,0.0002040357,0.00002263483,0.6700261,0.001321135,0.3177035,0.0004400711],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941977,0.0005635372,0.00002349656,0.001345383,0.0007974226,0.0003482953,0.0007698071,0.00008870717,0.001865688],"genre_scores_gemma":[0.9916974,0.0001188835,0.00004527139,0.0007549886,0.00004311894,0.00001303345,0.0005262856,0.00002222414,0.006778824],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.132779,"threshold_uncertainty_score":0.9995757,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01285811141728341,"score_gpt":0.237794671648912,"score_spread":0.2249365602316286,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}