{"id":"W4401715634","doi":"10.1128/spectrum.00031-24","title":"The core microbiome of cultured Pacific oyster spat is affected by age but not mortality","year":2024,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fisheries and Oceans Canada; Tula Foundation; University of British Columbia","funders":"Fisheries and Oceans Canada; Ministry of Technology, Innovation and Citizens' Services; British Columbia Knowledge Development Fund; Natural Sciences and Engineering Research Council of Canada; University of British Columbia; North Pacific Research Board; Gordon and Betty Moore Foundation","keywords":"Microbiome; Biology; Oyster; Metagenomics; Shellfish; Ecology; Zoology; Fishery; Fish <Actinopterygii>; Aquatic animal; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002614387,0.0003465523,0.0004222572,0.0003274516,0.0004900563,0.0006550677,0.0002242083,0.0003179968,0.001069692],"category_scores_gemma":[0.0007388491,0.0002506523,0.0003830438,0.0003245253,0.0003589443,0.0004951335,0.001135938,0.0005628877,0.0002162416],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000314737,"about_ca_system_score_gemma":0.0003548706,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008149748,"about_ca_topic_score_gemma":0.008810955,"domain_scores_codex":[0.9997498,0.00001508953,0.00002127969,0.00009670491,0.00006928835,0.00004779891],"domain_scores_gemma":[0.9993659,0.00005089765,0.0001946835,0.00004891299,0.0001897279,0.0001499176],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007199993,0.00006109931,0.2688097,0.0001073979,0.00007515437,0.0002551085,0.0009322852,0.0001788355,0.7237638,0.00004521049,0.0001981267,0.004853261],"study_design_scores_gemma":[0.000002934069,0.0001848272,0.9880831,0.00001133509,0.00002497159,0.0001208017,0.0005980319,0.0002499562,0.01024043,0.00003038977,0.0004441328,0.00000910153],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989086,0.0001238733,0.0001996271,0.00001462547,0.000006331607,0.0000059882,0.0004461138,0.000004508692,0.0002903422],"genre_scores_gemma":[0.9977757,0.0001478034,0.0003433684,0.00005325637,0.000005043109,0.00002299017,0.0007945566,0.000007694209,0.0008495736],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008149748,"threshold_uncertainty_score":0.0162046,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01285811141728341,"score_gpt":0.237794671648912,"score_spread":0.2249365602316286,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}