{"id":"W4401722676","doi":"10.1093/g3journal/jkae194","title":"Comparative genome analysis and the genome-shaping role of long terminal repeat retrotransposons in the evolutionary divergence of fungal pathogens <i>Blastomyces dermatitidis</i> and <i>Blastomyces gilchristii</i>","year":2024,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada Research Chairs; University of Toronto; Public Health Ontario","funders":"Centre for Applied Genomics","keywords":"Biology; Genome; Retrotransposon; Blastomyces; Blastomyces dermatitidis; Genetics; Genome size; Evolutionary biology; Transposable element; Gene; Blastomycosis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001039613,0.0001853968,0.0001714003,0.0006102895,0.0002068323,0.0003213952,0.0001546249,0.0002600242,0.0005131358],"category_scores_gemma":[0.0002918341,0.0001189651,0.0003436553,0.0006787744,0.0001208077,0.0002034673,0.0001938986,0.0003693075,0.0002177156],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002540151,"about_ca_system_score_gemma":0.0001941319,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001354036,"about_ca_topic_score_gemma":0.001822892,"domain_scores_codex":[0.9999149,0.00001156565,0.000006359449,0.00003713591,0.00001397357,0.00001610696],"domain_scores_gemma":[0.9998375,0.00004336827,0.00005161575,0.00001594599,0.00002054569,0.00003106954],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002568726,0.00004157659,0.01081503,0.00008802393,0.00003256926,0.000190136,0.0001622843,0.000440482,0.9825054,0.0001991871,0.00003569866,0.00523265],"study_design_scores_gemma":[0.00001926845,0.0004225686,0.849932,0.00003669346,0.0001734354,0.001798232,0.0007121263,0.007674629,0.1322645,0.0005577905,0.00637815,0.00003052919],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960086,0.000438929,0.001799671,0.0000296849,0.000003442243,0.0000105086,0.00116575,0.00002334445,0.0005200101],"genre_scores_gemma":[0.9874997,0.0005366215,0.006578632,0.00004756211,0.000004769903,0.00001634816,0.004843965,0.00002811712,0.0004442885],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001354036,"threshold_uncertainty_score":0.002692342,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0169839788933263,"score_gpt":0.2624046732053119,"score_spread":0.2454206943119856,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}