{"id":"W4401844462","doi":"10.1186/s12870-024-05446-1","title":"Improved pokeweed genome assembly and early gene expression changes in response to jasmonic acid","year":2024,"lang":"en","type":"article","venue":"BMC Plant Biology","topic":"Insect-Plant Interactions and Control","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"York University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Gene; Jasmonic acid; Genetics; Genome; Transcriptome; Arabidopsis; Transcription factor; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002796198,0.0001227638,0.0001683234,0.00006000392,0.00007394547,0.00006323298,0.0001212438,0.0001353726,0.00007901339],"category_scores_gemma":[0.0000422028,0.00004700152,0.00003393662,0.0001516938,0.00001714311,0.00004847976,0.0000665577,0.0001187797,0.00004030142],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002459132,"about_ca_system_score_gemma":0.00001248351,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005463916,"about_ca_topic_score_gemma":0.003751133,"domain_scores_codex":[0.9990391,0.0001633066,0.0001460838,0.0003325587,0.00003920429,0.0002798044],"domain_scores_gemma":[0.9994749,0.000369293,0.00002675555,0.00004388915,0.00001440809,0.00007078159],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008205244,0.00001565343,0.001500215,0.000003739411,0.00000534694,0.00001796838,0.00008705141,2.579391e-7,0.9928706,0.00003675458,0.00004566855,0.004596244],"study_design_scores_gemma":[0.0004959269,0.002899486,0.5078452,0.000127226,0.00001735798,0.0002978299,0.0002756755,0.0004298537,0.4007292,0.0001279534,0.08617891,0.0005753733],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971614,0.0008029325,0.00001355341,0.00109967,0.0002457743,0.000220157,0.0003430026,0.00005921813,0.00005427998],"genre_scores_gemma":[0.9989644,0.00007559019,0.0001031173,0.0002017292,0.0001692922,0.00006289785,0.00008701788,0.000001126627,0.000334826],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5921413,"threshold_uncertainty_score":0.2093221,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01913145569368198,"score_gpt":0.2330635738021745,"score_spread":0.2139321181084925,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}