{"id":"W4401913702","doi":"10.1093/infdis/jiae407","title":"Genomic Epidemiology of <i>Mycobacterium abscessus</i> on the Island of Montréal Is Not Suggestive of Health Care-Associated Person-to-Person Transmission","year":2024,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; McGill University Health Centre; McGill University; Public Health Agency of Canada; St. Michael's Hospital; Jewish General Hospital; Centre Hospitalier de l’Université de Montréal; Université Laval; Université de Montréal; Sinai Health System; Institut National de Santé Publique du Québec; University of Toronto; Western University","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Western Michigan University","keywords":"Epidemiology; Genetic epidemiology; Transmission (telecommunications); Single-nucleotide polymorphism; Nontuberculous mycobacteria; SNP; Genomics; Genome; Health care; Biology; Genetics; Medicine; Mycobacterium; Genotype; Pathology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002779591,0.0002752542,0.0002055122,0.0007689133,0.0007270187,0.0006574725,0.000446536,0.0002456061,0.002185293],"category_scores_gemma":[0.001347484,0.000121564,0.0002349632,0.0009702154,0.0005701201,0.000200818,0.0004171656,0.0002254174,0.0001181707],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00294376,"about_ca_system_score_gemma":0.003011121,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.7365225,"about_ca_topic_score_gemma":0.7413633,"domain_scores_codex":[0.9996769,0.00003362636,0.00001307539,0.0001066533,0.00006261284,0.0001071017],"domain_scores_gemma":[0.9990908,0.00007621163,0.0003822637,0.0000393961,0.0002529511,0.000158336],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00005702551,0.000009019374,0.9917526,0.00002719431,0.00004136013,0.0001638239,0.0003364406,0.0001010885,0.004214658,0.00006387949,0.000231796,0.003001164],"study_design_scores_gemma":[0.000001738633,0.00002508213,0.999054,0.000007080796,0.00001449617,0.00009449862,0.0002381534,0.0001383915,0.0001692656,0.00001253713,0.0002412476,0.00000336673],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975306,0.000158751,0.0002933608,0.0001074661,0.000003846877,0.00002812808,0.001023932,0.00001218257,0.0008417093],"genre_scores_gemma":[0.9993187,0.0000540099,0.0001753084,0.00003618495,0.000002434922,0.000005761039,0.0002910296,0.000002232829,0.0001144095],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2634775,"threshold_uncertainty_score":0.5300583,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02711311790228174,"score_gpt":0.3049088339592853,"score_spread":0.2777957160570035,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}