{"id":"W4401944835","doi":"10.21203/rs.3.rs-4940942/v1","title":"Bowel preparation-induced changes in the gut environment facilitate pathogen and pathobiont colonization","year":2024,"lang":"en","type":"preprint","venue":"Research Square","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University; University of British Columbia","funders":"","keywords":"Colonization; Pathogen; Biology; Ecology; Environmental ethics; Microbiology; Philosophy","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003018357,0.0003688948,0.0004900255,0.0002501798,0.0002166339,0.0009350962,0.0001535346,0.0008332351,0.004335553],"category_scores_gemma":[0.0007039064,0.000237798,0.0003803964,0.0001982691,0.0004374614,0.0005994044,0.0006501367,0.001003165,0.0007215944],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002503058,"about_ca_system_score_gemma":0.0003329872,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002601936,"about_ca_topic_score_gemma":0.0003389935,"domain_scores_codex":[0.9997281,0.00007387126,0.0000115695,0.00006809417,0.00004543895,0.00007291524],"domain_scores_gemma":[0.9997237,0.00007434169,0.00006770251,0.00004225719,0.00002073067,0.00007117091],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002303654,0.0001508156,0.001945906,0.0001171751,0.00002084165,0.0002928639,0.00007409514,0.0001235166,0.9870675,0.0005421084,0.0002143286,0.007147275],"study_design_scores_gemma":[0.0002541395,0.003411841,0.1611749,0.00007922343,0.0001463847,0.001296766,0.0005029324,0.003165408,0.8186668,0.003582969,0.007681385,0.00003730961],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9843255,0.003835036,0.006323663,0.0006247582,0.0003493459,0.00005025141,0.0003228269,0.0001286258,0.004039933],"genre_scores_gemma":[0.9927544,0.0009071865,0.003393122,0.0001473775,0.00007191724,0.00003517107,0.0002019117,0.0000659971,0.002422946],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004335553,"threshold_uncertainty_score":0.0145039,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06023768614627173,"score_gpt":0.3734356152141627,"score_spread":0.313197929067891,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}