{"id":"W4402015551","doi":"10.3389/fmicb.2024.1404795","title":"Tracking the microbial communities from the farm to the processing facility of a washed-rind cheese operation","year":2024,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Dairy Farmers of Ontario","keywords":"Biology; Milking; Food science; 16S ribosomal RNA; Lactose; Contamination; Bacteria; Microbiology; Serial dilution; Leuconostoc; Amplicon; Lactobacillus; Polymerase chain reaction; Animal science; Ecology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002307985,0.0002179829,0.0002391668,0.0005380046,0.0003708597,0.0004950747,0.0003918129,0.0002715952,0.0007475865],"category_scores_gemma":[0.0003996758,0.0002078288,0.000312623,0.0004261252,0.0002086257,0.0002614821,0.0004688138,0.0002298128,0.0002487549],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004042032,"about_ca_system_score_gemma":0.0005380866,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008274004,"about_ca_topic_score_gemma":0.01877725,"domain_scores_codex":[0.9997898,0.00002022864,0.00001140411,0.00008351562,0.00004991433,0.00004514022],"domain_scores_gemma":[0.9996123,0.00005704783,0.0001098973,0.00002214666,0.0001136806,0.00008502096],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006711462,0.0002752616,0.5108145,0.00009493398,0.00006957451,0.0009666136,0.001191515,0.001240745,0.4684273,0.00005101883,0.0001925769,0.01600481],"study_design_scores_gemma":[0.000006550802,0.0007825173,0.9678216,0.00001135802,0.00003578744,0.0002296719,0.00128752,0.002438858,0.02678533,0.00002057418,0.0005651002,0.00001513738],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994228,0.000007905469,0.0001848722,0.00000540037,9.20691e-7,0.00001206105,0.0001729496,0.000005546814,0.000187679],"genre_scores_gemma":[0.996529,0.00003647277,0.001989561,0.00001086848,0.000002070288,0.00002716513,0.0005096702,0.000004410611,0.0008908623],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008274004,"threshold_uncertainty_score":0.01645172,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01943898917392337,"score_gpt":0.2231885658683105,"score_spread":0.2037495766943871,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}