{"id":"W4402145256","doi":"10.1101/2024.08.30.610474","title":"Convergent and lineage-specific genomic changes shape adaptations in sugar-consuming birds","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Lineage (genetic); Sugar; Convergent evolution; Evolutionary biology; Biology; Zoology; Computational biology; Genetics; Gene; Food science; Phylogenetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008197239,0.0001505442,0.0001527692,0.0003378097,0.0001451287,0.0002677548,0.00008525109,0.0001920276,0.001300761],"category_scores_gemma":[0.0001567354,0.0001364089,0.0001973801,0.0002600664,0.0001844552,0.0001151883,0.0002704725,0.0002998418,0.0002919858],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001132645,"about_ca_system_score_gemma":0.00007186506,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006086041,"about_ca_topic_score_gemma":0.001544443,"domain_scores_codex":[0.9999238,0.00000712971,0.000002833204,0.00004235268,0.00001015408,0.00001371763],"domain_scores_gemma":[0.9998947,0.00002490406,0.00003705143,0.00001354403,0.000008689732,0.00002102952],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001750843,0.00001237179,0.02765758,0.00004832506,0.00003765182,0.000116401,0.000206625,0.0001501684,0.9648681,0.0002039003,0.00009119013,0.006432634],"study_design_scores_gemma":[0.00001024729,0.00007461924,0.9631369,0.00001077091,0.00003973871,0.0003950723,0.0001721016,0.00061002,0.03336758,0.0002107805,0.001964269,0.000008010396],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970619,0.0001870313,0.001083552,0.00002596498,0.000003221082,0.000004099853,0.0008541698,0.00003213547,0.0007478758],"genre_scores_gemma":[0.9942033,0.0002520106,0.001812677,0.0001208938,0.000007731509,0.0000168739,0.002114897,0.00004805699,0.001423645],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001300761,"threshold_uncertainty_score":0.004351437,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01929426680843966,"score_gpt":0.2200222243325715,"score_spread":0.2007279575241318,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}