{"id":"W4402250966","doi":"10.1101/2024.09.03.609457","title":"Population genomics of <i>Macrophomina</i> spp. reveals cryptic host specialization and evidence for meiotic recombination","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Nematode management and characterization studies","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Linnaeus Plant Sciences (Canada)","funders":"","keywords":"Biology; Meiosis; Population genomics; Host (biology); Recombination; Genomics; Genetics; Population; Homologous recombination; Evolutionary biology; Genome; Gene; Sociology; Demography","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001726596,0.0001367595,0.0001601112,0.0005597672,0.0002483146,0.0002868125,0.00009270394,0.0001804936,0.0006845353],"category_scores_gemma":[0.0003003889,0.00008336079,0.000152629,0.000441742,0.0001612021,0.0001143053,0.0002180039,0.0002229363,0.0001196367],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002080282,"about_ca_system_score_gemma":0.0001655882,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002274967,"about_ca_topic_score_gemma":0.004073848,"domain_scores_codex":[0.9998933,0.00001249935,0.000007136804,0.0000507104,0.00001459752,0.00002179963],"domain_scores_gemma":[0.9997868,0.00004986027,0.00009051539,0.0000174134,0.00002130899,0.00003410861],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002536323,0.00002221206,0.1026041,0.0000537362,0.00004411422,0.0001183955,0.0005085526,0.0001702747,0.8901933,0.0001130464,0.00007080526,0.005847636],"study_design_scores_gemma":[0.000006092963,0.0001452499,0.9875273,0.000006979144,0.00002175686,0.0003261145,0.0002944446,0.0004488105,0.0104405,0.00006092966,0.0007153848,0.000006483625],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992325,0.00003709305,0.0002610334,0.00000837847,8.21979e-7,0.00000385508,0.0002773195,0.000005886019,0.0001729853],"genre_scores_gemma":[0.9985685,0.00003074835,0.000566991,0.00001164864,0.000001585056,0.000005750432,0.0006603064,0.000004575471,0.0001499247],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002274967,"threshold_uncertainty_score":0.004523516,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03395523093080804,"score_gpt":0.2417829287788966,"score_spread":0.2078276978480886,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}