{"id":"W4402250966","doi":"10.1101/2024.09.03.609457","title":"Population genomics of <i>Macrophomina</i> spp. reveals cryptic host specialization and evidence for meiotic recombination","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Nematode management and characterization studies","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Linnaeus Plant Sciences (Canada)","funders":"","keywords":"Biology; Meiosis; Population genomics; Host (biology); Recombination; Genomics; Genetics; Population; Homologous recombination; Evolutionary biology; Genome; Gene; Sociology; Demography","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004673819,0.0002617532,0.0003986358,0.00006172798,0.0001521207,0.0002136615,0.0001883327,0.0001903607,0.00002898103],"category_scores_gemma":[0.0002125522,0.0001541217,0.00009540813,0.0003555382,0.00004742834,0.0001309008,0.0003835523,0.0001279446,0.00001070992],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001001976,"about_ca_system_score_gemma":0.00002027345,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003653467,"about_ca_topic_score_gemma":0.000009077638,"domain_scores_codex":[0.998475,0.00006441445,0.0004999207,0.0005632174,0.0001998448,0.000197647],"domain_scores_gemma":[0.9988555,0.0001575227,0.000472588,0.0001385674,0.0003184938,0.00005734298],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003417265,0.00004233934,0.0102017,0.001277174,0.00006059611,0.000001361479,0.00001275195,0.000006320164,0.9861186,0.002015505,0.0001913015,0.00003818592],"study_design_scores_gemma":[0.0002273828,0.000129095,0.9408708,0.001688849,0.0003291862,9.514091e-9,0.00001445171,0.0007022012,0.05388484,0.0002769447,0.001263684,0.0006126082],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995463,0.00182581,0.0001309257,0.0005977538,0.0007447253,0.001008621,0.000119506,0.0001052539,0.000004374784],"genre_scores_gemma":[0.9974738,0.001323271,0.0005869209,0.0000709337,0.0004069285,0.0001012502,0.000004052281,0.000008269783,0.00002451111],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9322338,"threshold_uncertainty_score":0.6284903,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03395523093080804,"score_gpt":0.2417829287788966,"score_spread":0.2078276978480886,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}