{"id":"W4402313685","doi":"10.1101/2024.09.05.611394","title":"Genomic characterization of foodborne <i>Salmonella enterica</i> and <i>Escherichia coli</i> isolates from Saboba district and Bolgatanga Municipality Ghana","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Salmonella enterica; Escherichia coli; Salmonella; Biology; Microbiology; Gene; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001538183,0.0003816701,0.0003117681,0.001122657,0.0003840603,0.0006183989,0.0002156994,0.0003085171,0.001536004],"category_scores_gemma":[0.0005435316,0.000168427,0.0003387147,0.00173696,0.000298119,0.0001697024,0.0003967126,0.0002806564,0.0004394844],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003442925,"about_ca_system_score_gemma":0.0004069773,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01527357,"about_ca_topic_score_gemma":0.01460845,"domain_scores_codex":[0.999778,0.00003064621,0.00002190483,0.00007841257,0.0000382223,0.0000528309],"domain_scores_gemma":[0.9995056,0.00006845714,0.0002194673,0.00001870422,0.0001126289,0.00007510213],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004611833,0.0001144099,0.6984369,0.0005507558,0.00007446387,0.001910062,0.004196464,0.0002737286,0.2773917,0.0001055327,0.0006708892,0.01581381],"study_design_scores_gemma":[0.00001158216,0.0001734331,0.9815329,0.00006849497,0.00003744242,0.00159962,0.004737067,0.0001500253,0.006919325,0.00002571333,0.004737257,0.000007065141],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993564,0.0003760553,0.0003819615,0.000075655,0.000006992805,0.00005434186,0.004674183,0.00001211391,0.0008546305],"genre_scores_gemma":[0.9885079,0.0005352963,0.001614598,0.0000874882,0.000009046206,0.00005949727,0.008327373,0.00001325327,0.0008455211],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01527357,"threshold_uncertainty_score":0.03036934,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01554660264886984,"score_gpt":0.2028723103178107,"score_spread":0.1873257076689409,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}