{"id":"W4402364341","doi":"10.1128/mra.00825-24","title":"Complete genome sequence of <i>Bacillus pumilus</i> LBUM494, a plant-beneficial strain isolated from the rhizosphere of a strawberry plant","year":2024,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Agriculture and Agri-Food Canada","funders":"","keywords":"Rhizosphere; Bacillus pumilus; Whole genome sequencing; Biology; Strain (injury); Genome; Botany; Bacillus (shape); Microbiology; Genetics; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002500881,0.0002343629,0.0003552783,0.00001845505,0.0002138093,0.00004932077,0.0006301508,0.000177842,0.0006520906],"category_scores_gemma":[0.00001680481,0.00009480297,0.0001506227,0.00028639,0.0002717241,0.00007841153,0.0001753985,0.0003433364,0.00005136734],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004191328,"about_ca_system_score_gemma":0.0000316345,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002591153,"about_ca_topic_score_gemma":0.001368215,"domain_scores_codex":[0.9984422,0.000199339,0.0005359639,0.000360448,0.00009614385,0.0003658869],"domain_scores_gemma":[0.9991433,0.0003935431,0.0002056916,0.0001463164,0.00006707268,0.00004407643],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001791061,0.00009415762,0.0004969189,0.00001620501,0.0001787656,0.00001601408,0.00037856,0.00001781968,0.9940682,0.00002461757,0.002704087,0.001825558],"study_design_scores_gemma":[0.0002477892,0.0005615696,0.001949014,0.0002805118,0.00006325691,0.0001635121,0.00146167,0.0001771239,0.004480651,0.00006279092,0.9902719,0.0002801845],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7838138,0.0009994041,0.000006819313,0.0003365724,0.0001937629,0.0002068228,0.214177,0.00003658814,0.0002292056],"genre_scores_gemma":[0.9624314,0.00013447,0.00003219892,0.0003596513,0.0001270202,0.000008685315,0.03665775,0.000003016803,0.0002458334],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9895875,"threshold_uncertainty_score":0.7139935,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02947130796029604,"score_gpt":0.2220410082648706,"score_spread":0.1925697003045746,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}