{"id":"W4402364343","doi":"10.1128/spectrum.00706-24","title":"Characterization of azithromycin-resistant <i>Shigella flexneri</i> serotype 2a isolates using whole genome sequencing in Ontario from 2016 to 2018","year":2024,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Public Health Ontario","funders":"","keywords":"Shigella flexneri; Azithromycin; Serotype; Biology; Whole genome sequencing; Genome; Shigella; Genetics; Microbiology; Virology; Gene; Antibiotics; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002662801,0.0004415157,0.0004141992,0.001488432,0.001362379,0.0008834443,0.0004755519,0.0002831006,0.001382285],"category_scores_gemma":[0.0008095711,0.0003147637,0.00052875,0.002597189,0.0004192594,0.0002537712,0.0005696423,0.0003077172,0.0002593258],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.006820314,"about_ca_system_score_gemma":0.01073598,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9106546,"about_ca_topic_score_gemma":0.944701,"domain_scores_codex":[0.9994949,0.00001544296,0.00002787678,0.00009515649,0.0001989614,0.000167572],"domain_scores_gemma":[0.9989393,0.00003078207,0.0002354315,0.0000309735,0.000590526,0.000173005],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003393029,0.0000333567,0.9497823,0.0002807809,0.0000938119,0.001377736,0.002863503,0.0002685313,0.03014091,0.00009176817,0.002861074,0.01186697],"study_design_scores_gemma":[0.000005129399,0.00003000388,0.9941112,0.000035059,0.00002993492,0.0002340187,0.0008890667,0.0001617848,0.0009005918,0.00001015026,0.003585738,0.000007225241],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9803154,0.0005992295,0.0004319261,0.0002019152,0.00002202624,0.0001080576,0.0153309,0.00002836029,0.002962246],"genre_scores_gemma":[0.9818084,0.0009317952,0.0008445071,0.0001925395,0.00001727926,0.00006375551,0.01364957,0.00002800764,0.002464139],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0893454,"threshold_uncertainty_score":0.1797431,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01695484442262763,"score_gpt":0.2463300783681058,"score_spread":0.2293752339454782,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}