{"id":"W4402412098","doi":"10.1128/msystems.00362-24","title":"The occurrence of <i>Aerococcus urinaeequi</i> and non-aureus staphylococci in raw milk negatively correlates with <i>Escherichia coli</i> clinical mastitis","year":2024,"lang":"en","type":"article","venue":"mSystems","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; McGill University; Fonds de Recherche du Québec – Nature et Technologies; Cegep de Saint Hyacinthe","funders":"Agriculture and Agri-Food Canada; Dairy Farmers of Canada","keywords":"Udder; Microbiome; Mastitis; Metagenomics; Raw milk; Biology; Escherichia coli; Microbiology; Staphylococcus aureus; Staphylococcus; Veterinary medicine; Bacteria; Food science; Medicine; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002595153,0.000253208,0.0003147535,0.0005198685,0.0002567336,0.00059218,0.0001385488,0.0003385694,0.001271992],"category_scores_gemma":[0.0006704419,0.0001614565,0.0002358408,0.000421007,0.0002269457,0.0002230356,0.0002737274,0.0003540016,0.0001700359],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001571888,"about_ca_system_score_gemma":0.0001080849,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001246118,"about_ca_topic_score_gemma":0.001530218,"domain_scores_codex":[0.999649,0.00005611304,0.0000414223,0.00008389932,0.00009061227,0.00007893451],"domain_scores_gemma":[0.9991508,0.0001220842,0.0004394636,0.00002976313,0.0001269434,0.0001309745],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006235785,0.00009365196,0.9131832,0.0000511921,0.0000697041,0.0001260865,0.00006831015,0.00005250534,0.08242562,0.0000102909,0.000114877,0.003181027],"study_design_scores_gemma":[0.000001286634,0.000140345,0.9959393,0.00000600047,0.00001780555,0.0002369648,0.0001349419,0.000134202,0.003261988,0.000008024662,0.0001171819,0.000001963533],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992261,0.0002871647,0.00009666015,0.00002166247,0.000003788908,0.000003354822,0.0001272615,0.000004347543,0.0002296146],"genre_scores_gemma":[0.9994042,0.00008174685,0.0001922016,0.00002254197,0.000006387989,0.000003113278,0.0001681433,0.000001351457,0.0001201793],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001271992,"threshold_uncertainty_score":0.004255235,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01932340265756154,"score_gpt":0.2542763410504151,"score_spread":0.2349529383928535,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}