{"id":"W4402412098","doi":"10.1128/msystems.00362-24","title":"The occurrence of <i>Aerococcus urinaeequi</i> and non-aureus staphylococci in raw milk negatively correlates with <i>Escherichia coli</i> clinical mastitis","year":2024,"lang":"en","type":"article","venue":"mSystems","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; McGill University; Fonds de Recherche du Québec – Nature et Technologies; Cegep de Saint Hyacinthe","funders":"Agriculture and Agri-Food Canada; Dairy Farmers of Canada","keywords":"Udder; Microbiome; Mastitis; Metagenomics; Raw milk; Biology; Escherichia coli; Microbiology; Staphylococcus aureus; Staphylococcus; Veterinary medicine; Bacteria; Food science; Medicine; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009545695,0.0001912377,0.0003482882,0.00001364703,0.0001549727,0.0001407577,0.0003141803,0.0001315079,0.00003057405],"category_scores_gemma":[0.00009282438,0.00006571966,0.00007851805,0.0005022213,0.0003877793,0.0001157187,0.0001086664,0.0003258275,0.00001989657],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001690156,"about_ca_system_score_gemma":0.00003871553,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006888332,"about_ca_topic_score_gemma":0.003942979,"domain_scores_codex":[0.9981715,0.0002705738,0.0005921986,0.0004052249,0.0002486172,0.000311876],"domain_scores_gemma":[0.9982551,0.001336416,0.0001386272,0.0001037366,0.0000610817,0.0001049948],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001587853,0.0009618875,0.6258758,0.002080258,0.0004828151,0.0008457561,0.004146145,0.0002246723,0.1111263,0.02519765,0.04237974,0.1850911],"study_design_scores_gemma":[0.001887963,0.004472242,0.4445327,0.003747061,0.0001105576,0.00009619343,0.00469365,0.003232046,0.003741874,0.001884754,0.5302487,0.001352313],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9928746,0.00324275,0.00003800292,0.0004871683,0.0006694936,0.0005264544,0.0001668763,0.00004853498,0.001946162],"genre_scores_gemma":[0.9986273,0.0006809419,0.00003189518,0.0001035774,0.0001586027,0.00004902449,0.00001572015,0.000001698996,0.0003312073],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.487869,"threshold_uncertainty_score":0.267997,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01932340265756154,"score_gpt":0.2542763410504151,"score_spread":0.2349529383928535,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}