{"id":"W4402485864","doi":"10.1128/aac.00570-24","title":"Recent increase in <i>Candida auris</i> frequency in the SENTRY surveillance program: antifungal activity and genotypic characterization","year":2024,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Genentech; U.S. Food and Drug Administration; National Institutes of Health; Astellas Pharma; Basilea Pharmaceutica; Ohio State University; Nabriva Therapeutics; Pfizer; Melinta Therapeutics; Entasis Therapeutics; Wockhardt; Mundipharma International; Zoetis; Menarini Group; McGill University; Roche; Cidara Therapeutics; Medpace; Carnegie Mellon University; TenNor Therapeutics; Harvard University; Meiji Seika Pharma; Shionogi; National Cancer Institute; Gilead Sciences; GlaxoSmithKline; Dr. Falk Pharma","keywords":"Candida auris; Anidulafungin; Fluconazole; Amphotericin B; Micafungin; Caspofungin; Microbiology; Biology; Clade; Genotype; Antifungal; Genetics; Phylogenetic tree","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007221995,0.0001863053,0.0001609833,0.001425486,0.0002522767,0.0006567477,0.0003312748,0.0002810717,0.0007956367],"category_scores_gemma":[0.002177638,0.00009765309,0.0001758198,0.0009749106,0.0002389499,0.000333112,0.0003056626,0.000322585,0.000146274],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000478505,"about_ca_system_score_gemma":0.00027044,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01264703,"about_ca_topic_score_gemma":0.01252964,"domain_scores_codex":[0.9992822,0.0001203534,0.00008588009,0.0001671549,0.0002062875,0.000138175],"domain_scores_gemma":[0.9969694,0.0002390478,0.001412772,0.0001172398,0.0008809158,0.0003807146],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003751734,0.00001682025,0.990978,0.00002213909,0.00001476098,0.0001041025,0.0001057302,0.00004086006,0.001928995,0.00001646919,0.0004667329,0.006267884],"study_design_scores_gemma":[9.877209e-7,0.00003928081,0.9977671,0.00001019388,0.000006271409,0.0004123892,0.000153354,0.0001593909,0.0007419856,0.00000493314,0.0007015998,0.000002517653],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976052,0.0004300872,0.0001686107,0.0001837622,0.00001203756,0.000008653175,0.0007239371,0.00002371975,0.000843992],"genre_scores_gemma":[0.9986007,0.0002195125,0.000206207,0.00009223117,0.00002422548,0.00000430182,0.0006975505,0.000004077509,0.0001512354],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01264703,"threshold_uncertainty_score":0.02514684,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01150606630237285,"score_gpt":0.2787268001910243,"score_spread":0.2672207338886515,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}