{"id":"W4402514253","doi":"10.1099/acmi.0.000820.v4","title":"Comparative genome analyses of Staphylococcus aureus from platelet concentrates reveal rearrangements involving loss of type VII secretion genes","year":2024,"lang":"en","type":"article","venue":"Access Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Blood Services; Health Canada; University of Ottawa","funders":"Health Canada; Government of Canada; Canadian Blood Services; Australian Government","keywords":"Virulence; Staphylococcus aureus; Genome; Biology; Mobile genetic elements; Gene; Microbiology; Pathogenicity island; Genetics; Type VI secretion system; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001551583,0.0002665572,0.0009182903,0.0002385407,0.00005174827,0.00003032343,0.0003327277,0.0002206656,0.000484209],"category_scores_gemma":[0.00005078786,0.000225775,0.0001566852,0.0005683043,0.0005766222,0.0001583155,0.0001619037,0.0002264854,0.00002948905],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009906387,"about_ca_system_score_gemma":0.0002131831,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006516257,"about_ca_topic_score_gemma":0.00009316637,"domain_scores_codex":[0.9982207,0.0001408811,0.000707485,0.0004911782,0.00009935428,0.0003403394],"domain_scores_gemma":[0.9986168,0.0002534864,0.0003121715,0.0003499576,0.0003951951,0.00007235265],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006298752,0.00008279065,0.01972419,0.0003580162,0.0008730176,0.00006639616,0.0005911464,0.000063362,0.9758614,0.00005668623,0.001510795,0.0001823652],"study_design_scores_gemma":[0.000813604,0.0003118301,0.02126717,0.0005504057,0.0003162755,0.00001037757,0.0002887268,0.00008426319,0.9714547,0.0001775933,0.004484986,0.0002399992],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9753442,0.02233515,0.0002500853,0.00009792781,0.000394757,0.0004965727,0.0007585615,0.00005252072,0.0002701639],"genre_scores_gemma":[0.9967213,0.001318422,0.0005750398,0.00011145,0.000141071,0.000008400528,0.0009901803,0.00002717012,0.0001070216],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02137698,"threshold_uncertainty_score":0.9206836,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07204643270065683,"score_gpt":0.3782150037756404,"score_spread":0.3061685710749835,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}