{"id":"W4402541722","doi":"10.1093/jas/skae234.504","title":"PSVII-10 Genome-wide discovery and characterization of short interspersed nuclear elements (SINEs) in the bovine genome","year":2024,"lang":"en","type":"article","venue":"Journal of Animal Science","topic":"Animal Genetics and Reproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; Université Laval","funders":"","keywords":"Genome; Bovine genome; Biology; Computational biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006409199,0.00006109035,0.0000795476,0.00008792257,0.00004303223,0.00008353482,0.000200031,0.00002676797,0.000009359197],"category_scores_gemma":[0.00004068098,0.00003924059,0.00003795802,0.0002173968,0.000177875,0.00003486998,0.00007293692,0.00006689502,7.316788e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001645099,"about_ca_system_score_gemma":0.00006885446,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000001424551,"about_ca_topic_score_gemma":0.00000114846,"domain_scores_codex":[0.9992768,0.00001787152,0.0002408367,0.0001672275,0.0001914077,0.0001058919],"domain_scores_gemma":[0.9997088,0.000003149035,0.00008145071,0.00008906922,0.00008788179,0.00002963548],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001339929,0.0000301054,0.001539929,0.0000118413,0.000008210804,0.000004830283,0.0001690513,0.000003688951,0.9973371,0.00003653955,0.00001161087,0.0007130818],"study_design_scores_gemma":[0.000194962,0.00353947,0.8470725,0.00005499392,0.00003084513,0.0001635767,0.0006644084,0.0003337521,0.120151,0.00001871373,0.02762455,0.0001512114],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986255,0.0005161203,0.0001641482,0.0003797955,0.00008927991,0.00005895997,0.000003621609,9.444342e-7,0.0001616645],"genre_scores_gemma":[0.9988472,0.0006968837,0.0001111632,0.0000636501,0.0001914414,3.494032e-7,0.000003003617,0.000005392724,0.0000809286],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8771861,"threshold_uncertainty_score":0.1600185,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009423218827913457,"score_gpt":0.2510026760343405,"score_spread":0.241579457206427,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}