{"id":"W4402592481","doi":"10.1038/s44185-024-00054-6","title":"The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics","year":2024,"lang":"en","type":"article","venue":"npj Biodiversity","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of New Brunswick","funders":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement; Novo Nordisk Fonden; Biotechnology and Biological Sciences Research Council; Institut Ruđer Bošković; Uppsala Universitet; Uniwersytet Warszawski; Université de Lausanne; Université de Bordeaux; Université du Luxembourg; Universidade de Lisboa; Tel Aviv University; Direction Régionale de l'Environnement, de l'Aménagement et du Logement PACA; Office Français de la Biodiversité; Università degli Studi di Milano; Wellcome Trust; Agence Nationale de la Recherche; Oxford Brookes University; Fundação para a Ciência e a Tecnologia; Helsingin Yliopisto","keywords":"Genome; Genomics; Equity (law); Computational biology; Biology; Geography; Data science; Environmental resource management; Evolutionary biology; Political science; Computer science; Gene; Genetics; Environmental science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006084002,0.0002050015,0.000134164,0.00005601772,0.0009654013,0.0001804068,0.0005887484,0.00007486462,0.000006771133],"category_scores_gemma":[0.00003359124,0.0001698176,0.000112142,0.0001988758,0.000129078,0.000002534642,0.001330314,0.0001258252,0.0003254859],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006820881,"about_ca_system_score_gemma":0.00006091758,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009622663,"about_ca_topic_score_gemma":0.00003118325,"domain_scores_codex":[0.9984642,0.0001132446,0.0001526037,0.0005640686,0.0001388099,0.0005671215],"domain_scores_gemma":[0.9993188,0.00001739007,0.00004250692,0.0003870415,0.0000758551,0.0001583977],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002851139,0.0001749229,0.01974269,0.0001162032,0.0006120448,0.00003483285,0.002050408,0.000592887,0.883959,0.0004454668,0.08206666,0.009919786],"study_design_scores_gemma":[0.0003926824,0.0002047912,0.03716018,0.000007886857,0.00009752654,0.00001017522,0.000939418,0.00003839668,0.007072609,0.00003332784,0.9535666,0.0004764163],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9726222,0.003067511,0.0006411227,0.0004174463,0.0003268148,0.0003138842,0.0005292527,0.00002940524,0.02205239],"genre_scores_gemma":[0.9966826,0.001117797,0.001039521,0.0003345154,0.0001633915,0.000003281486,0.0001448668,0.000009720486,0.0005042801],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8768864,"threshold_uncertainty_score":0.7425184,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03098310888789393,"score_gpt":0.2191500077089819,"score_spread":0.1881668988210879,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}