{"id":"W4402611003","doi":"10.1093/jacamr/dlae149","title":"Genomic insights into epidemic plasmids carrying <i>bla</i>CTX-M and <i>mcr-1</i> genes in <i>Escherichia coli</i> from Lebanese broiler production","year":2024,"lang":"en","type":"article","venue":"JAC-Antimicrobial Resistance","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement; Conseil National de la Recherche Scientifique; Saint Joseph University; Centre National de la Recherche Scientifique; Agence Universitaire de la Francophonie; European Commission","keywords":"Broiler; Plasmid; Escherichia coli; Biology; Gene; Genetics; MCR-1; Microbiology; Multiple drug resistance; Enterobacteriaceae; Drug resistance; Animal science","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002803761,0.000461446,0.000483947,0.0001291919,0.0001736105,0.0001947066,0.000353723,0.0003736659,0.00001473434],"category_scores_gemma":[0.0001584574,0.0004704766,0.0001312325,0.0003688394,0.0003360989,0.0000458766,0.0001900382,0.0003376351,0.00003382931],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001345745,"about_ca_system_score_gemma":0.00024373,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003587497,"about_ca_topic_score_gemma":0.003066384,"domain_scores_codex":[0.9970357,0.0001905294,0.0006764367,0.001383852,0.0001898578,0.0005236455],"domain_scores_gemma":[0.9988965,0.00007182817,0.0001604485,0.0006620034,0.00008192631,0.0001273376],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004335959,0.00004144072,0.01149138,0.0003029249,0.00007928606,0.00004371274,0.0003014776,0.00006679177,0.974062,0.00007810941,0.01259936,0.0004999596],"study_design_scores_gemma":[0.0006471259,0.00005750025,0.02909062,0.0007960797,0.00007504849,0.00001812016,0.00009433068,0.000109585,0.8007619,0.0003129007,0.1671615,0.0008752507],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9775207,0.01922093,0.0003619198,0.000574872,0.001342644,0.0004524935,0.00005916173,0.00007260841,0.0003946606],"genre_scores_gemma":[0.9843981,0.006448712,0.004741426,0.0005506897,0.0008660408,0.00002474725,0.0001937345,0.000107534,0.002669063],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1733,"threshold_uncertainty_score":0.9997747,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007416705239144427,"score_gpt":0.2301430140723545,"score_spread":0.2227263088332101,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}