{"id":"W4402611003","doi":"10.1093/jacamr/dlae149","title":"Genomic insights into epidemic plasmids carrying <i>bla</i>CTX-M and <i>mcr-1</i> genes in <i>Escherichia coli</i> from Lebanese broiler production","year":2024,"lang":"en","type":"article","venue":"JAC-Antimicrobial Resistance","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement; Conseil National de la Recherche Scientifique; Saint Joseph University; Centre National de la Recherche Scientifique; Agence Universitaire de la Francophonie; European Commission","keywords":"Broiler; Plasmid; Escherichia coli; Biology; Gene; Genetics; MCR-1; Microbiology; Multiple drug resistance; Enterobacteriaceae; Drug resistance; Animal science","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001001523,0.0003407484,0.0002230269,0.001209391,0.0003411636,0.0006389691,0.0002172841,0.0003419559,0.001154468],"category_scores_gemma":[0.0003192541,0.0001757618,0.0003266313,0.0007683273,0.0001932657,0.0001475552,0.0002678633,0.0004119816,0.000385066],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003315861,"about_ca_system_score_gemma":0.0003986858,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005097414,"about_ca_topic_score_gemma":0.004661626,"domain_scores_codex":[0.9998573,0.00001325558,0.00001040252,0.00004504767,0.00002493027,0.00004913986],"domain_scores_gemma":[0.9996889,0.00005794821,0.0001140992,0.0000212019,0.00005961625,0.00005841357],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000484986,0.0002116434,0.1428228,0.0001547087,0.00005278587,0.001394665,0.0009600333,0.0002778996,0.8411085,0.0002381937,0.000178735,0.01211505],"study_design_scores_gemma":[0.00002152418,0.0003939009,0.9145926,0.00005498605,0.0001209781,0.003017493,0.002679956,0.0009289309,0.07449181,0.0001232337,0.003554186,0.00002052254],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978498,0.0001476736,0.0005676969,0.00003674141,0.000003416818,0.00001964927,0.0008914435,0.00001027439,0.0004731534],"genre_scores_gemma":[0.9942133,0.0002329301,0.001219701,0.00007161936,0.00001145425,0.00001733635,0.003376193,0.00001182531,0.0008455265],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005097414,"threshold_uncertainty_score":0.01013547,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007416705239144427,"score_gpt":0.2301430140723545,"score_spread":0.2227263088332101,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}