{"id":"W4402621411","doi":"10.1128/mra.00622-24","title":"Draft genome sequences of clinical <i>Mycobacterium canettii</i> strains in Canada","year":2024,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de Santé Publique du Québec; Manitoba Health; University of Manitoba; Public Health Agency of Canada","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Genome; Biology; Computational biology; Genetics; Whole genome sequencing; Mycobacterium; Evolutionary biology; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006224812,0.0001957914,0.0005935854,0.0001595662,0.00003184394,0.00001830668,0.0002179,0.0001523377,0.0006209198],"category_scores_gemma":[0.0001068651,0.0001617415,0.0001135372,0.0003015651,0.000217638,0.000051306,0.0001061407,0.0004419762,0.00005380315],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003603724,"about_ca_system_score_gemma":0.003235071,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.3057104,"about_ca_topic_score_gemma":0.3483695,"domain_scores_codex":[0.9977475,0.0001917051,0.0008185019,0.000483998,0.0001669175,0.0005914164],"domain_scores_gemma":[0.9991279,0.0001850858,0.00008970778,0.0003080212,0.00007873085,0.0002105671],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001473632,0.0000977532,0.3610663,0.0002603839,0.0001326318,0.0006030394,0.0001185876,0.000004932538,0.6248887,0.000006366728,0.01140617,0.001267752],"study_design_scores_gemma":[0.00125185,0.0007633364,0.0921497,0.0004274125,0.00005976388,0.0001847436,0.0004237859,0.00002638538,0.001848835,0.000005270223,0.9026279,0.0002310614],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9909366,0.002522036,0.0000030592,0.001182355,0.0003179053,0.0003442978,0.0027903,0.0000245933,0.001878887],"genre_scores_gemma":[0.9944437,0.0003657023,0.00008216834,0.001545557,0.0002026645,0.00002786402,0.002586536,0.00002030641,0.0007255208],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8912217,"threshold_uncertainty_score":0.6989129,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03166928371865572,"score_gpt":0.3232769932141308,"score_spread":0.2916077094954751,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}