{"id":"W4402621492","doi":"10.1128/mra.00674-24","title":"Metagenome from ACT-3/CF: an anaerobic chloroform-degrading microbial community","year":2024,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada","keywords":"Metagenomics; Chloroform; Anaerobic exercise; Microbial population biology; Microbiology; Biodegradation; Environmental chemistry; Chemistry; Biology; Chromatography; Bacteria; Ecology; Biochemistry; Physiology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.001023302,0.0004657774,0.0005207288,0.0001356103,0.001215537,0.0001063835,0.001464844,0.0004704669,0.01228196],"category_scores_gemma":[0.00002886777,0.0004398541,0.0001817197,0.000419298,0.0009149041,0.0004063458,0.001145583,0.001495158,0.003784056],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003536289,"about_ca_system_score_gemma":0.0000397486,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00289052,"about_ca_topic_score_gemma":0.003759904,"domain_scores_codex":[0.9962898,0.001549108,0.0005155161,0.0006806834,0.0000773278,0.000887496],"domain_scores_gemma":[0.998358,0.0002837229,0.0001256437,0.001045753,0.0000151782,0.0001717451],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001144196,0.0002736482,0.003370248,0.00001177523,0.0001951051,0.00002253534,0.002874884,0.00008005399,0.9606689,0.00003607136,0.03077796,0.001574383],"study_design_scores_gemma":[0.0005664272,0.0005185907,0.002583323,0.000038539,0.000103179,0.00007273947,0.0006014766,0.00006936437,0.005922715,0.0006388629,0.9882952,0.000589559],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9919319,0.0003818656,0.00007694704,0.0002598511,0.0005967027,0.0003498514,0.00156659,0.0002488433,0.004587484],"genre_scores_gemma":[0.9767425,0.00004792842,0.0006949674,0.003080497,0.0001921798,0.00003071953,0.01708987,0.00006176094,0.002059564],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9575173,"threshold_uncertainty_score":0.9998053,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02252441537213363,"score_gpt":0.2518529688265173,"score_spread":0.2293285534543836,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}