{"id":"W4402621492","doi":"10.1128/mra.00674-24","title":"Metagenome from ACT-3/CF: an anaerobic chloroform-degrading microbial community","year":2024,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada","keywords":"Metagenomics; Chloroform; Anaerobic exercise; Microbial population biology; Microbiology; Biodegradation; Environmental chemistry; Chemistry; Biology; Chromatography; Bacteria; Ecology; Biochemistry; Physiology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002654281,0.000613277,0.0002971973,0.000613037,0.0004524834,0.000522188,0.0002086651,0.0004568227,0.0007344994],"category_scores_gemma":[0.0004726057,0.0001565236,0.0004159864,0.0006797668,0.0001926543,0.0003159441,0.0003907672,0.0006002245,0.0003573866],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002559352,"about_ca_system_score_gemma":0.0008187871,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005441066,"about_ca_topic_score_gemma":0.00720214,"domain_scores_codex":[0.9997478,0.00002532091,0.0000208165,0.00006106802,0.0001024321,0.00004257209],"domain_scores_gemma":[0.99984,0.00003525313,0.00002841874,0.00001667341,0.00003970009,0.00003990987],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001811712,0.00001977317,0.001660372,0.00009211223,0.000008811648,0.00005054299,0.00005073694,0.0001189773,0.9953822,0.00002834034,0.0001052029,0.002301711],"study_design_scores_gemma":[0.00005701267,0.0004571397,0.08873126,0.00006801628,0.0001786273,0.001144214,0.0004108837,0.002815626,0.8936243,0.0001771694,0.01227778,0.00005785865],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.964245,0.000835222,0.008013819,0.0002981633,0.000059408,0.0001419037,0.02433507,0.0002210903,0.001850309],"genre_scores_gemma":[0.9050696,0.001365812,0.03667878,0.0003704645,0.00004200311,0.000192852,0.05272847,0.0001994776,0.003352587],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005441066,"threshold_uncertainty_score":0.01081878,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02252441537213363,"score_gpt":0.2518529688265173,"score_spread":0.2293285534543836,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}