{"id":"W4402636126","doi":"10.1016/j.cell.2024.08.010","title":"Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic","year":2024,"lang":"en","type":"article","venue":"Cell","topic":"Zoonotic diseases and public health","field":"Medicine","cited_by":86,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Saskatchewan","funders":"U.S. National Library of Medicine; Fundação para a Ciência e a Tecnologia; Wellcome Trust; Biotechnology and Biological Sciences Research Council; National Institute of Allergy and Infectious Diseases; Fuel Cell Technologies Program; Innovation and Technology Commission; Horizon 2020; Medical Research Council; Fonds Wetenschappelijk Onderzoek; Canadian Institutes of Health Research; National Health and Medical Research Council; Horizon 2020 Framework Programme; University of California, San Diego; Canada Foundation for Innovation; Government of Saskatchewan; Centers for Disease Control and Prevention; European Research Council; Vlaamse regering; European Commission; Innovation Saskatchewan; HORIZON EUROPE Framework Programme; H2020 European Research Council; U.S. Department of Health and Human Services; National Institutes of Health; Ministry of Agriculture of the People's Republic of China","keywords":"Biology; Pandemic; Coronavirus disease 2019 (COVID-19); 2019-20 coronavirus outbreak; Virology; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Wildlife; Wildlife trade; Evolutionary biology; Ecology; Outbreak; Infectious disease (medical specialty); Disease","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002749241,0.00005700958,0.0001199152,0.00002199333,0.00003836953,0.000007122293,0.00006186928,0.00003034352,0.000801492],"category_scores_gemma":[0.0001036301,0.00002804718,0.00006286272,0.00008495979,0.0001146407,0.00001361489,0.00004868034,0.00007633994,0.00000444051],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003458093,"about_ca_system_score_gemma":0.000262567,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001637831,"about_ca_topic_score_gemma":0.00003320542,"domain_scores_codex":[0.9994065,0.0000699466,0.0001771186,0.00010934,0.0001291457,0.0001079453],"domain_scores_gemma":[0.9993239,0.0002748035,0.00004277315,0.0002129672,0.00001412313,0.0001314103],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003169816,0.0001990575,0.7985979,0.00858622,0.0001269251,0.00002732282,0.004048606,0.00003884128,0.003983664,0.0001466247,0.1666564,0.01727144],"study_design_scores_gemma":[0.001410448,0.0001773927,0.2897349,0.0004497234,0.0004015941,0.0001172557,0.0009640667,0.001497731,0.000793636,0.0003236577,0.704006,0.0001235153],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9821362,0.006126471,0.0000601421,0.003508295,0.0001455292,0.0002313443,0.00003314628,0.0000130131,0.007745794],"genre_scores_gemma":[0.9899709,0.0004355863,0.00002000458,0.007437147,0.0000664598,0.000003537789,0.000001101049,0.000008515861,0.002056709],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5373496,"threshold_uncertainty_score":0.8775775,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03943433527972441,"score_gpt":0.3151331813611677,"score_spread":0.2756988460814433,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}