{"id":"W4402636467","doi":"10.1099/ijsem.0.006523","title":"Taxonogenomic analysis of the Xanthomonas translucens complex leads to the descriptions of Xanthomonas cerealis sp. nov. and Xanthomonas graminis sp. nov.","year":2024,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; University of Manitoba; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Manitoba Crop Alliance; Western Grains Research Foundation; University of Saskatchewan","keywords":"Biology; Pathovar; Xanthomonas; Botany; Microbiology; Acanthaceae; Strain (injury); Bacteria; Genetics; Pseudomonadaceae; Pseudomonas","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006702721,0.0001911689,0.00069065,0.0001271207,0.0001641345,0.00004139233,0.000582623,0.00009727496,0.0001072452],"category_scores_gemma":[0.0001302701,0.00006826538,0.0003642656,0.0004044043,0.0003825029,0.00009402636,0.0001701996,0.0001461356,0.000004333842],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006567746,"about_ca_system_score_gemma":0.00004124407,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000164899,"about_ca_topic_score_gemma":0.0007956789,"domain_scores_codex":[0.9980152,0.0003188149,0.001045635,0.0002269075,0.0002042577,0.0001891802],"domain_scores_gemma":[0.9981405,0.0007965759,0.0005090366,0.00009386659,0.0003983248,0.00006171472],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008361189,0.0000842952,0.01303674,0.000391996,0.002124389,0.00001377051,0.0008107799,0.00006809626,0.9804681,0.001043667,0.001524435,0.000350138],"study_design_scores_gemma":[0.0003842486,0.0003611013,0.9748627,0.002935,0.002530746,0.004852709,0.002592302,0.0007210207,0.002009674,0.0002316216,0.008162047,0.0003568067],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9845996,0.005751736,0.0001186933,0.004893498,0.0006794995,0.0003401014,0.003541602,0.000007352558,0.00006784261],"genre_scores_gemma":[0.998624,0.0006611219,0.0002535248,0.0001308036,0.0001557683,0.00001106467,0.00009176851,0.000002172059,0.00006982053],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9784584,"threshold_uncertainty_score":0.2783782,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03629631937091665,"score_gpt":0.2423875127543,"score_spread":0.2060911933833833,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}