{"id":"W4402789469","doi":"10.1098/rsob.240141","title":"Phylogenomic diversity of archigregarine apicomplexans","year":2024,"lang":"en","type":"article","venue":"Open Biology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Hakai Institute; Japan Society for the Promotion of Science; Tula Foundation; Fundação para a Ciência e a Tecnologia; Gordon and Betty Moore Foundation","keywords":"Biology; Clade; Obligate; Evolutionary biology; Phylogenetic tree; Lineage (genetic); Phylogenomics; Phylogenetics; Apicomplexa; Range (aeronautics); Zoology; Genetics; Gene; Ecology; Plasmodium falciparum; Malaria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001221867,0.0002250287,0.0002690987,0.001128092,0.0003867229,0.0004364455,0.0001171371,0.0002323962,0.0009227312],"category_scores_gemma":[0.0003177977,0.000123023,0.0002249093,0.0008091542,0.0002803644,0.0003123948,0.0004742615,0.0002358033,0.0003007067],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001503587,"about_ca_system_score_gemma":0.0001236397,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007541569,"about_ca_topic_score_gemma":0.001672801,"domain_scores_codex":[0.9998862,0.000009501774,0.00001095191,0.00006170002,0.00001498717,0.00001660835],"domain_scores_gemma":[0.9997912,0.00003894934,0.00007117131,0.00002782944,0.00003177343,0.0000390441],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005442303,0.00003170483,0.2106473,0.0001720908,0.0001602471,0.0004470402,0.001472196,0.0005020429,0.768196,0.0003898572,0.0002696206,0.01716761],"study_design_scores_gemma":[0.00000930172,0.00007907247,0.9853746,0.00001941087,0.00007133016,0.0006319177,0.000605638,0.0008762091,0.008343538,0.0002358186,0.003737941,0.00001512332],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981028,0.0002706408,0.0003628774,0.00002503848,0.000001270295,0.000003647553,0.0008105874,0.00001347882,0.0004096113],"genre_scores_gemma":[0.9942458,0.0002967734,0.001421153,0.00003987675,0.000003850746,0.00001818949,0.003341312,0.00001911819,0.0006139267],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001128092,"threshold_uncertainty_score":0.003086865,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03175740569743073,"score_gpt":0.2922211643092647,"score_spread":0.260463758611834,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}