{"id":"W4402900275","doi":"10.1183/23120541.00204-2024","title":"The lung proteome in HIV-associated obstructive lung disease","year":2024,"lang":"en","type":"article","venue":"ERJ Open Research","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Institutes of Health; National Heart, Lung, and Blood Institute; National Institute of Health Sciences","keywords":"Medicine; Lung; Human immunodeficiency virus (HIV); Obstructive lung disease; Proteome; Pulmonary disease; Lung disease; Disease; Immunology; Intensive care medicine; Pathology; Internal medicine; Bioinformatics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002690158,0.0002589987,0.0002200448,0.0008133697,0.0003478142,0.0004221035,0.0001240891,0.0002535194,0.0006642811],"category_scores_gemma":[0.0003361182,0.00009990725,0.0002015367,0.0007811603,0.0002217559,0.0002722065,0.0003971381,0.000220777,0.0001287606],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000178576,"about_ca_system_score_gemma":0.0001967026,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007849008,"about_ca_topic_score_gemma":0.001154979,"domain_scores_codex":[0.999886,0.00002394203,0.000009656264,0.00003538126,0.00002732123,0.00001770301],"domain_scores_gemma":[0.999878,0.00002501047,0.00005108893,0.000007413795,0.00001849837,0.00001993518],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00119788,0.00009208328,0.1684895,0.0004845048,0.0001790134,0.0006067056,0.0002261718,0.001216917,0.8043714,0.0002332467,0.0003725643,0.02252995],"study_design_scores_gemma":[0.00002075156,0.0004471403,0.929042,0.00005536462,0.0001338846,0.002046176,0.0003723871,0.005932976,0.05892054,0.0009093343,0.002101238,0.00001828331],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9939343,0.003117852,0.001388089,0.0001006452,0.00000870754,0.0000215174,0.0009406705,0.00002407032,0.0004642109],"genre_scores_gemma":[0.9941763,0.001288518,0.003160837,0.00007277169,0.00001255369,0.00002324114,0.0009852707,0.0000039026,0.0002765757],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008133697,"threshold_uncertainty_score":0.0022223,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06469113738329967,"score_gpt":0.4333862863436615,"score_spread":0.3686951489603618,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}