{"id":"W4402900275","doi":"10.1183/23120541.00204-2024","title":"The lung proteome in HIV-associated obstructive lung disease","year":2024,"lang":"en","type":"article","venue":"ERJ Open Research","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Institutes of Health; National Heart, Lung, and Blood Institute; National Institute of Health Sciences","keywords":"Medicine; Lung; Human immunodeficiency virus (HIV); Obstructive lung disease; Proteome; Pulmonary disease; Lung disease; Disease; Immunology; Intensive care medicine; Pathology; Internal medicine; Bioinformatics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00158854,0.0001448221,0.0002159414,0.0002562258,0.000414215,0.0005611082,0.000359235,0.00006773946,0.0002046814],"category_scores_gemma":[0.000870783,0.0000919836,0.00008000393,0.001103382,0.0001546044,0.000182898,0.0003935624,0.0008482034,0.0003980216],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001161253,"about_ca_system_score_gemma":0.0006316716,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003609192,"about_ca_topic_score_gemma":0.0001662696,"domain_scores_codex":[0.9974524,0.0004160265,0.0002515505,0.0004760441,0.0008097671,0.0005941771],"domain_scores_gemma":[0.9985245,0.0005341383,0.00002325098,0.000439664,0.0001613502,0.0003170646],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.01224727,0.004455684,0.5480365,0.002063457,0.00370821,0.03965874,0.008162134,0.0001009355,0.02344696,0.04807654,0.1911925,0.1188511],"study_design_scores_gemma":[0.003125992,0.0002920608,0.93621,0.001170657,0.00007631576,0.00006067304,0.0005735084,0.02150939,0.000748026,0.00271611,0.03326796,0.0002492683],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9095494,0.005253859,0.00002390481,0.03637474,0.0005669632,0.009404541,0.00009122427,0.0001950177,0.03854035],"genre_scores_gemma":[0.9614947,0.0001453022,0.00002501854,0.00004999865,0.00007605636,0.001268761,0.00002634511,0.00003523374,0.03687858],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3881736,"threshold_uncertainty_score":0.5410779,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06469113738329967,"score_gpt":0.4333862863436615,"score_spread":0.3686951489603618,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}