{"id":"W4402900560","doi":"10.1002/prot.26752","title":"The Crystal Structure of the Domain of Unknown Function 1480 ( <scp>DUF1480</scp> ) From <i>Klebsiella pneumoniae</i>","year":2024,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Klebsiella pneumoniae; Structural similarity; Biology; Proteome; Function (biology); Computational biology; Protein structure; Protein domain; Conserved sequence; Protein family; Genetics; Peptide sequence; Escherichia coli; Gene; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009891643,0.0002137243,0.0001772962,0.00003372636,0.000242295,0.00006923748,0.0001805528,0.0001947252,0.000007300293],"category_scores_gemma":[0.00005917783,0.0001168536,0.000121847,0.0001678046,0.0002318968,0.000005026539,0.0001848236,0.0001741904,6.476332e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009583875,"about_ca_system_score_gemma":0.00007576768,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001663727,"about_ca_topic_score_gemma":0.0001125296,"domain_scores_codex":[0.9989579,0.00004196472,0.000407943,0.0001869058,0.0002138698,0.0001913933],"domain_scores_gemma":[0.9992266,0.00005100356,0.0002137691,0.0003562002,0.0001078702,0.00004451346],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004371132,0.000007740836,0.001310556,0.0001709495,0.0002547631,9.488892e-8,0.0004522113,0.00007327248,0.9878982,0.001482027,0.0009892375,0.007317229],"study_design_scores_gemma":[0.001142801,0.001210659,0.02254012,0.0001511256,0.0003778688,0.00004451179,0.003514725,0.001429983,0.4776472,0.03043909,0.46118,0.0003219434],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9899937,0.004464939,0.002795048,0.0001263107,0.001107176,0.0004866836,0.0004629014,0.000008637302,0.0005546372],"genre_scores_gemma":[0.9978854,0.0003410337,0.001153726,0.0001084605,0.0002430379,0.000006707929,0.00006070413,0.00001638916,0.0001845246],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.510251,"threshold_uncertainty_score":0.4765151,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003537527091576753,"score_gpt":0.1794510049911016,"score_spread":0.1759134778995248,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}