{"id":"W4402900560","doi":"10.1002/prot.26752","title":"The Crystal Structure of the Domain of Unknown Function 1480 ( <scp>DUF1480</scp> ) From <i>Klebsiella pneumoniae</i>","year":2024,"lang":"en","type":"article","venue":"Proteins Structure Function and Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Klebsiella pneumoniae; Structural similarity; Biology; Proteome; Function (biology); Computational biology; Protein structure; Protein domain; Conserved sequence; Protein family; Genetics; Peptide sequence; Escherichia coli; Gene; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001323167,0.0002908144,0.0003271358,0.0001664349,0.0003067141,0.0003910204,0.0004636664,0.0004836669,0.001649103],"category_scores_gemma":[0.000406429,0.0001515443,0.0002253919,0.0003515842,0.0001535971,0.0002620764,0.0002433955,0.0006796301,0.0003921352],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006402489,"about_ca_system_score_gemma":0.0006870698,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004368461,"about_ca_topic_score_gemma":0.00564547,"domain_scores_codex":[0.9999132,0.000007451441,0.000005207845,0.00001691805,0.00004099011,0.0000161877],"domain_scores_gemma":[0.9998926,0.00002404275,0.00002290077,0.000005509965,0.00002588807,0.00002904779],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000998172,0.0003800583,0.02403941,0.001252428,0.0001516813,0.002013039,0.0006811389,0.002799229,0.9053749,0.001946156,0.01257927,0.0477846],"study_design_scores_gemma":[0.0005348985,0.001436182,0.2236034,0.0002976852,0.0003478962,0.009639905,0.001716697,0.04078451,0.4917776,0.001241964,0.2284503,0.0001688962],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9837222,0.004297865,0.002705576,0.000490081,0.0001165575,0.00004748656,0.003990998,0.0001974866,0.004431784],"genre_scores_gemma":[0.9415405,0.002982598,0.01945231,0.0002476263,0.00002584351,0.00005570882,0.03005494,0.0001024506,0.0055381],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004368461,"threshold_uncertainty_score":0.008686066,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003537527091576753,"score_gpt":0.1794510049911016,"score_spread":0.1759134778995248,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}