{"id":"W4402901266","doi":"10.1186/s12890-024-03301-5","title":"Advantages of metagenomic next-generation sequencing in the management of ANCA-associated vasculitis patients with suspected pulmonary infection as a rule-out tool","year":2024,"lang":"en","type":"article","venue":"BMC Pulmonary Medicine","topic":"Vasculitis and related conditions","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Trinity College","funders":"Fundamental Research Funds for the Central Universities; National Key Research and Development Program of China; Peking University; Chinese Academy of Medical Sciences; Peking University First Hospital","keywords":"Medicine; Metagenomics; ANCA-Associated Vasculitis; Vasculitis; Intensive care medicine; DNA sequencing; Computational biology; Immunology; Pathology; Disease; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00212123,0.0004264895,0.0007793538,0.001418839,0.0002708063,0.0008464807,0.0003757661,0.0004758555,0.0006055763],"category_scores_gemma":[0.003865889,0.0001853236,0.0004205038,0.0007530726,0.0002085565,0.0005043814,0.0004687106,0.0004073938,0.0001233523],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002966973,"about_ca_system_score_gemma":0.0004640518,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005125734,"about_ca_topic_score_gemma":0.00115362,"domain_scores_codex":[0.9987221,0.0006269677,0.0001621922,0.0001705552,0.0002432269,0.0000749492],"domain_scores_gemma":[0.9981407,0.0007043612,0.0005719146,0.00010067,0.0002921901,0.0001900177],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001967097,0.0001582533,0.8851008,0.0003309808,0.0003553534,0.001938805,0.0002934596,0.0016846,0.02558508,0.000204471,0.000480322,0.08190072],"study_design_scores_gemma":[0.0001724464,0.002642966,0.9217455,0.0006813056,0.001101727,0.01297682,0.001280526,0.02989702,0.02062933,0.001265624,0.007509361,0.00009731579],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9798823,0.009343366,0.008270643,0.0007191277,0.00009579511,0.00006349763,0.0004234934,0.00005978736,0.0011419],"genre_scores_gemma":[0.9896534,0.001115805,0.008661265,0.0001779508,0.00007513865,0.00003164196,0.0002039111,0.000008144218,0.00007269489],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00212123,"threshold_uncertainty_score":0.01121825,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03200213436034603,"score_gpt":0.2683893560312149,"score_spread":0.2363872216708688,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}