{"id":"W4402906020","doi":"10.1016/j.mimet.2024.107049","title":"Campylobacter fetus subspecies specific PCR assays inferred from comparative genomic analysis for accurate subspecies identification","year":2024,"lang":"en","type":"article","venue":"Journal of Microbiological Methods","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Canadian Food Inspection Agency","keywords":"Subspecies; Biology; Identification (biology); Campylobacter; Campylobacter fetus; Microbiology; Polymerase chain reaction; Genetics; Computational biology; Bacteria; Gene; Zoology; Ecology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002866558,0.0003381261,0.00116592,0.000122147,0.000184814,0.0003013175,0.0006180207,0.000346132,0.001034651],"category_scores_gemma":[0.0003291719,0.0001272788,0.001077232,0.0008918175,0.0002297016,0.0002303989,0.0001029616,0.00042364,0.00005192765],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001446778,"about_ca_system_score_gemma":0.00002168083,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003514272,"about_ca_topic_score_gemma":0.00006618293,"domain_scores_codex":[0.9959902,0.001519243,0.00135763,0.0005612257,0.0001244447,0.0004472294],"domain_scores_gemma":[0.9930285,0.005656239,0.000692896,0.0001292321,0.0003349746,0.0001581607],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002062659,0.00007636734,0.0101919,0.000004895614,0.000811955,0.00001113064,0.0002139706,0.00005627924,0.9664338,0.0003194138,0.002664139,0.01900994],"study_design_scores_gemma":[0.0002179389,0.0003967071,0.7985902,0.00002757917,0.0005087919,0.00005558075,0.0006295827,0.0001760684,0.03175051,0.005123278,0.1621652,0.0003585795],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9640163,0.007013757,0.02575955,0.00113197,0.001198263,0.0002578496,0.0004488028,0.00005636999,0.0001170953],"genre_scores_gemma":[0.9734048,0.001213892,0.02332904,0.0001973565,0.00128887,0.00001482618,0.0003367794,0.000002967333,0.0002114492],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9346833,"threshold_uncertainty_score":0.9998785,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1618779998191893,"score_gpt":0.3820739094494964,"score_spread":0.2201959096303071,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}