{"id":"W4402908065","doi":"10.3168/jds.2024-25196","title":"Estimation of genetic parameters and genome-wide association study for enzootic bovine leukosis resistance in Canadian Holstein cattle","year":2024,"lang":"en","type":"article","venue":"Journal of Dairy Science","topic":"T-cell and Retrovirus Studies","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Agricultural Research Service; Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement; Universidade Estadual Paulista; Freie Universität Berlin; Université Laval; Ministry of Agriculture, Food and Rural Affairs; La Trobe University; University of Florida; University of Alberta; Genome Alberta; University of Prince Edward Island; Vellore Institute of Technology, Chennai; Iowa State University; Genome British Columbia; University of Guelph; Genome Canada; Dairy Farmers of Canada; University of Wisconsin-Madison; University of Georgia; McGill University; University of Calgary; Eidgenössische Technische Hochschule Zürich; University of British Columbia; Michigan State University; Foundation for Food and Agriculture Research; Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria; Aarhus Universitet; Ontario Ministry of Research, Innovation and Science; Purdue University; U.S. Department of Agriculture","keywords":"Holstein Cattle; Biology; Dairy cattle; Enzootic; Genetics; Bovine genome; Genome-wide association study; Cattle Diseases; Estimation; Veterinary medicine; Animal science; Genome; Virology; Genotype; Medicine; Single-nucleotide polymorphism; Gene; Engineering","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001904684,0.0005070207,0.0004080167,0.002106081,0.00117787,0.0008297809,0.001028519,0.0004336599,0.001754386],"category_scores_gemma":[0.003055268,0.0002491031,0.0008890667,0.002873074,0.0006388162,0.0001713804,0.0003336755,0.0005882478,0.0001504207],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.007006024,"about_ca_system_score_gemma":0.006658784,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9234917,"about_ca_topic_score_gemma":0.9373179,"domain_scores_codex":[0.9989585,0.0001823027,0.00004951087,0.0003738636,0.0002288178,0.0002070628],"domain_scores_gemma":[0.9986467,0.0004920391,0.0002284743,0.0001407906,0.0003027518,0.0001893515],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002413215,0.00003937813,0.9840391,0.00002086764,0.0004733158,0.0001796756,0.0002986011,0.002852708,0.002236166,0.0002970835,0.0003944353,0.008927396],"study_design_scores_gemma":[0.00001007735,0.00002124017,0.9941452,0.000007789151,0.0001067327,0.00005311585,0.0001398457,0.004718299,0.0001185666,0.00004258022,0.0006264145,0.00001010569],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9953858,0.000260321,0.001576343,0.00007418625,0.000004096792,0.00002250231,0.001928289,0.0000364796,0.0007119693],"genre_scores_gemma":[0.9953023,0.0001335535,0.001987675,0.00002149284,0.000002796355,0.00001293639,0.001903119,0.00001351527,0.0006226045],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07650828,"threshold_uncertainty_score":0.1539177,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01232477927071732,"score_gpt":0.2471907579639729,"score_spread":0.2348659786932555,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}