{"id":"W4402908065","doi":"10.3168/jds.2024-25196","title":"Estimation of genetic parameters and genome-wide association study for enzootic bovine leukosis resistance in Canadian Holstein cattle","year":2024,"lang":"en","type":"article","venue":"Journal of Dairy Science","topic":"T-cell and Retrovirus Studies","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Agricultural Research Service; Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement; Universidade Estadual Paulista; Freie Universität Berlin; Université Laval; Ministry of Agriculture, Food and Rural Affairs; La Trobe University; University of Florida; University of Alberta; Genome Alberta; University of Prince Edward Island; Vellore Institute of Technology, Chennai; Iowa State University; Genome British Columbia; University of Guelph; Genome Canada; Dairy Farmers of Canada; University of Wisconsin-Madison; University of Georgia; McGill University; University of Calgary; Eidgenössische Technische Hochschule Zürich; University of British Columbia; Michigan State University; Foundation for Food and Agriculture Research; Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria; Aarhus Universitet; Ontario Ministry of Research, Innovation and Science; Purdue University; U.S. Department of Agriculture","keywords":"Holstein Cattle; Biology; Dairy cattle; Enzootic; Genetics; Bovine genome; Genome-wide association study; Cattle Diseases; Estimation; Veterinary medicine; Animal science; Genome; Virology; Genotype; Medicine; Single-nucleotide polymorphism; Gene; Engineering","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009754544,0.00005860726,0.0001659415,0.0003295361,0.0001222086,0.00002518581,0.0001286134,0.00003935501,0.000003625857],"category_scores_gemma":[0.0006701953,0.00004579143,0.00003076186,0.0002933144,0.0001505709,0.0001375289,0.00001868753,0.0001101518,0.000002674973],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003143257,"about_ca_system_score_gemma":0.0004168303,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003731032,"about_ca_topic_score_gemma":0.04138344,"domain_scores_codex":[0.9992666,0.00004534524,0.0002976012,0.0001192243,0.00006500226,0.0002062538],"domain_scores_gemma":[0.9993621,0.0003055509,0.0001593057,0.00006025829,0.00008300955,0.00002974397],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001571808,0.0001600524,0.9033998,0.0001632866,0.0002196687,0.00002270008,0.01213141,0.001199952,0.07612526,0.00008974633,0.001435104,0.004895904],"study_design_scores_gemma":[0.0005814233,0.0005933901,0.9933808,0.00009445904,0.00006515482,0.0000072248,0.0009789293,0.00008802293,0.002970386,0.0002317362,0.0009261883,0.00008226085],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922066,0.006526243,0.0001324666,0.0005028164,0.0004174406,0.0001478146,0.00001186668,0.000002658025,0.00005208681],"genre_scores_gemma":[0.9988668,0.00005733212,0.0006207912,0.00002887819,0.00000837443,0.000003007203,6.353556e-7,0.000003042685,0.0004111389],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08998109,"threshold_uncertainty_score":0.9761088,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01232477927071732,"score_gpt":0.2471907579639729,"score_spread":0.2348659786932555,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}