{"id":"W4402935666","doi":"10.1101/2024.09.26.615182","title":"Does strain-level persistence of lactobacilli in long term back-slopped sourdoughs inform on domestication of food-fermenting lactic acid bacteria?","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Technische Universität München; Mitacs; Canada Research Chairs","keywords":"Domestication; Persistence (discontinuity); Lactic acid; Strain (injury); Fermentation; Bacteria; Food science; Biology; Microbiology; Genetics; Engineering; Anatomy","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005366223,0.0002958727,0.0005479089,0.0006825367,0.000428464,0.001107949,0.0002815556,0.000561562,0.0009612211],"category_scores_gemma":[0.000838364,0.0002143224,0.0003597579,0.0006802006,0.0003984863,0.0005846682,0.000519104,0.0004142523,0.0002677487],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003146443,"about_ca_system_score_gemma":0.0001381645,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004344242,"about_ca_topic_score_gemma":0.006003075,"domain_scores_codex":[0.9996779,0.00003502689,0.00002467316,0.0001146705,0.00006270822,0.00008502898],"domain_scores_gemma":[0.9989935,0.0001606428,0.0003751568,0.00008656316,0.0002515678,0.0001326716],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004043092,0.0000618806,0.6225002,0.00008102084,0.00008590599,0.0002495293,0.000722811,0.0001072977,0.3709517,0.00003637374,0.00006698792,0.004732004],"study_design_scores_gemma":[0.00000153974,0.00008931187,0.9937044,0.000007166593,0.00001578136,0.0001497255,0.0004769361,0.000164704,0.005176935,0.00001942959,0.0001847577,0.000009233797],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991601,0.0001759616,0.0002359173,0.00001760778,0.000003121498,0.000004176858,0.0002649557,0.000004782365,0.0001334823],"genre_scores_gemma":[0.9986712,0.00007563524,0.0004100054,0.00003811767,0.000004721197,0.000007880162,0.0005694078,0.000006420607,0.0002165064],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004344242,"threshold_uncertainty_score":0.008637965,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03123916159564574,"score_gpt":0.2241502827339539,"score_spread":0.1929111211383081,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}