{"id":"W4402943571","doi":"10.1016/j.antiviral.2024.106016","title":"Comprehensive Herpesviruses Antiviral drug Resistance Mutation Database (CHARMD)","year":2024,"lang":"en","type":"article","venue":"Antiviral Research","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval","funders":"","keywords":"Virology; Drug resistance; Mutation; Antiviral drug; Drug; Biology; Computational biology; Genetics; Virus; Pharmacology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001900106,0.0003205006,0.0004948147,0.001093858,0.0004780358,0.0004956791,0.0003658428,0.0001524344,0.0003312915],"category_scores_gemma":[0.0003919447,0.0002748606,0.0002320495,0.002277354,0.0007477957,0.0007501291,0.0003836353,0.00186137,0.00469329],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002741404,"about_ca_system_score_gemma":0.0008252349,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007711275,"about_ca_topic_score_gemma":0.0004292441,"domain_scores_codex":[0.9944575,0.0005369775,0.0004706876,0.001022624,0.00224541,0.001266777],"domain_scores_gemma":[0.9972824,0.0009072114,0.00003530519,0.0007969614,0.0007584105,0.0002197016],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003065136,0.0006818828,0.002427109,0.003739414,0.0004489485,0.01220111,0.001851641,3.957558e-7,0.4010162,0.01477155,0.4502254,0.1095713],"study_design_scores_gemma":[0.001398951,0.0002667519,0.004084656,0.001403016,0.00005267578,0.00006035032,0.0008265022,0.001484428,0.1353836,0.00128294,0.8532994,0.0004568174],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9256976,0.012168,0.0001561876,0.006383711,0.0004509794,0.001427701,0.000245769,0.0004143908,0.05305569],"genre_scores_gemma":[0.943527,0.002234864,0.0005166173,0.0002654968,0.0006043991,0.0000863028,0.0001841726,0.0001026649,0.05247852],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.403074,"threshold_uncertainty_score":0.9999704,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1101139214188476,"score_gpt":0.432911242165294,"score_spread":0.3227973207464464,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}