{"id":"W4403064353","doi":"10.1101/2024.10.01.616199","title":"The genome of <i>Gallaecimonas pentaromativorans</i> strain 10A, isolated from a Pacific oyster, reveals the potential for hydrocarbon degradation and CRISPR-Cas defense","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fisheries and Oceans Canada; University of British Columbia","funders":"","keywords":"CRISPR; Oyster; Strain (injury); Degradation (telecommunications); Biology; Ecology; Genetics; Gene; Anatomy; Engineering","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008062078,0.0005777346,0.0002738334,0.0003303429,0.0002309634,0.0004614206,0.0002685965,0.000334953,0.0007428947],"category_scores_gemma":[0.0001813617,0.0001785752,0.0005798194,0.0004471909,0.000208893,0.0001462714,0.0004652392,0.0006009543,0.0003703019],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003306406,"about_ca_system_score_gemma":0.0004804593,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01241522,"about_ca_topic_score_gemma":0.01022494,"domain_scores_codex":[0.9998345,0.000009805009,0.00001551506,0.00006126722,0.0000434809,0.00003541624],"domain_scores_gemma":[0.9998453,0.00002072963,0.00005692942,0.00001917198,0.00001897585,0.00003889109],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000788414,0.00002784901,0.002073889,0.0000476717,0.00001316774,0.0001365562,0.00004111314,0.00007975601,0.9955271,0.00002452525,0.0000806716,0.001868935],"study_design_scores_gemma":[0.00004195599,0.0007561075,0.274548,0.00006544086,0.0002220572,0.002758306,0.0007333892,0.004805617,0.6986943,0.0001509844,0.01715834,0.00006548456],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9918852,0.00033812,0.001904585,0.000131861,0.00003495445,0.00005855577,0.004187617,0.0001457893,0.001313315],"genre_scores_gemma":[0.9752518,0.0003969452,0.007106029,0.0001769651,0.00001032048,0.00005334497,0.01382547,0.00007030948,0.003108755],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01241522,"threshold_uncertainty_score":0.02468592,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007565606245807795,"score_gpt":0.1911818174318478,"score_spread":0.18361621118604,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}