{"id":"W4403089624","doi":"10.1101/2024.10.02.616390","title":"Decoding Collagen's Thermally Induced Unfolding and Refolding Pathways","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Collagen: Extraction and Characterization","field":"Materials Science","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Decoding methods; Chemistry; Biophysics; Computer science; Biology; Telecommunications","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","scholarly_communication"],"consensus_categories":[],"category_scores_codex":[0.001052061,0.0006273452,0.0005826188,0.0004210637,0.0003912068,0.001418025,0.000465332,0.0006231581,0.0002820512],"category_scores_gemma":[0.0002029685,0.0006652013,0.0001289049,0.0005553929,0.00007290355,0.0003184846,0.001138258,0.0005429703,0.0002399971],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000434573,"about_ca_system_score_gemma":0.0005987645,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003223106,"about_ca_topic_score_gemma":0.000004258456,"domain_scores_codex":[0.9966852,0.0001793304,0.0007131911,0.001318685,0.0004874805,0.0006160958],"domain_scores_gemma":[0.9979205,0.00008935136,0.0004977582,0.0008645356,0.0003130249,0.0003148316],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002250134,0.00003646154,0.0002393338,0.000460833,0.00004261036,0.00009897151,0.00008727498,0.00001288545,0.9977069,0.001209441,0.00006980421,0.00001291984],"study_design_scores_gemma":[0.0002682768,0.0000350992,0.008110786,0.0008275487,0.0001328709,1.482757e-7,0.00002156407,0.001222558,0.9870734,0.00001473646,0.001413227,0.0008797374],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993056,0.0007461861,0.0002622675,0.0002258136,0.003865359,0.0006438569,0.0001716253,0.0009565072,0.00007237284],"genre_scores_gemma":[0.9970602,0.0002458813,0.001436774,0.00020151,0.0007160611,0.0001493951,4.998353e-7,0.0001757841,0.00001386741],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01063352,"threshold_uncertainty_score":0.9996186,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0229312241685354,"score_gpt":0.2290158718232462,"score_spread":0.2060846476547108,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}