{"id":"W4403245132","doi":"10.1016/j.xgen.2024.100670","title":"The loach haplotype-resolved genome and the identification of Mex3a involved in fish air breathing","year":2024,"lang":"en","type":"article","venue":"Cell Genomics","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministry of Agriculture","funders":"Huazhong Agricultural University; National Natural Science Foundation of China","keywords":"Haplotype; Fish <Actinopterygii>; Identification (biology); Biology; Genome; Evolutionary biology; Genetics; Breathing; Computational biology; Fishery; Gene; Anatomy; Ecology; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006162748,0.0001143012,0.000146073,0.00005455523,0.0001698116,0.00005490993,0.0002647433,0.00009734661,0.00001520273],"category_scores_gemma":[0.00002037227,0.00006861778,0.00007328986,0.0001157177,0.0003316006,0.00004819931,0.0001444412,0.0001843952,0.00007951524],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003785041,"about_ca_system_score_gemma":0.00003152887,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005327766,"about_ca_topic_score_gemma":0.0000977941,"domain_scores_codex":[0.9991452,0.0001148427,0.0003266702,0.0002159081,0.00001868593,0.0001787479],"domain_scores_gemma":[0.9994712,0.0001511622,0.0000856045,0.0002586947,0.00002410867,0.000009153553],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000195212,0.0000410527,0.0001475123,0.0001160742,0.0001763076,0.000004032923,0.00456309,0.00005547039,0.9833798,0.006087668,0.003218278,0.002015493],"study_design_scores_gemma":[0.005262896,0.00006520441,0.01201152,0.0000952383,0.0006397808,0.00002374666,0.01003898,0.0009486747,0.1711729,0.003449313,0.7956647,0.0006270458],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9471295,0.04741207,0.0004354344,0.001639413,0.0006830844,0.0007273969,0.00005742676,0.00005838841,0.001857276],"genre_scores_gemma":[0.9927248,0.001482,0.0000153421,0.0001725817,0.00002591755,0.00001788368,0.000119531,0.00001527404,0.005426659],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8122069,"threshold_uncertainty_score":0.2798152,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006618291304832509,"score_gpt":0.1990815028877974,"score_spread":0.1924632115829649,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}