{"id":"W4403333625","doi":"10.1073/pnas.2401578121","title":"A multilocus perspective on the evolutionary dynamics of multistrain pathogens","year":2024,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Evolutionary dynamics; Perspective (graphical); Biology; Evolutionary biology; Dynamics (music); Multilocus sequence typing; Computational biology; Genetics; Computer science; Sociology; Artificial intelligence; Genotype; Demography","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001531868,0.0004132005,0.0006377721,0.001225838,0.0007677433,0.001854339,0.001024294,0.00122771,0.002615821],"category_scores_gemma":[0.00325655,0.0002030719,0.0004655897,0.0007806534,0.002354553,0.003288696,0.001134045,0.001611564,0.0002955654],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001935777,"about_ca_system_score_gemma":0.0005568335,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003802077,"about_ca_topic_score_gemma":0.003108858,"domain_scores_codex":[0.9995,0.000251882,0.00001332248,0.00008250873,0.0000873856,0.00006486093],"domain_scores_gemma":[0.9984598,0.001004776,0.0001636246,0.0000788731,0.0001136668,0.0001791621],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.00001881446,0.00001654847,0.003672548,0.00005938476,0.00004624242,0.0002085402,0.0004105313,0.0346038,0.001062509,0.9455639,0.0009824185,0.01335479],"study_design_scores_gemma":[0.00001319004,0.0000478295,0.004377008,0.00004453346,0.00002693444,0.0002745403,0.000337629,0.08628377,0.0001501088,0.89922,0.009187332,0.00003707931],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.3111232,0.04063544,0.4832583,0.05797438,0.0006772612,0.00006126611,0.0005289653,0.0001900601,0.1055511],"genre_scores_gemma":[0.9607792,0.008492129,0.02443526,0.001260447,0.0005115876,0.00003009868,0.00007337073,0.00003490513,0.004382913],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.003802077,"threshold_uncertainty_score":0.01404512,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02025727187288372,"score_gpt":0.3062436987886851,"score_spread":0.2859864269158013,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}